Job Description P77277 Confidence 100.00% Date Thu Jan 5 12:27:07 GMT 2012 Rank 8 Aligned Residues 239 % Identity 22% Template c2ychA_ PDB info PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex Resolution 2.20 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		E	S	P	L	W	L	G	V	D	L	G	T	C	D	V	V	S	M	V	V	D	R	D	G	.	.	.	Q	P	V	A	V	C	L	D	W	A	D	V	V	R	D	G	I	V	W	D	F	F	G	A	V	T	I	V	R	R	H	L	D	T	L	E	Q	Q	F	G	R	R	F	S	H	A	A	T	S	F	P	P	G
Query Conservation																										.	.	.
Alig confidence																										.	.	.																																				.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		P	R	V	E	A	L	G	L	E	I	G	A	S	A	L	K	L	V	E	V	S	G	N	P	P	A	L	K	A	L	A	S	R	P	T	P	P	G	L	L	X	E	G	X	V	A	E	P	A	A	L	A	Q	E	I	K	E	L	L	L	E	A	.	.	.	.	R	T	R	K	R	Y	V	V	T	A	L	S	N	L
Template Known Secondary structure													S	S									T	T	T	T												T	T	S			T	T			S																	.	.	.	.	T												G	G
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.
		104																																																																.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	R	I	S	I	N	V	L	E	S	A	G	L	E	V
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	I	L	R	P	I	Q	V	P	K	X	P	L	K	E	X	E	E	A	V	R	W	E	A	E	R	Y	I	P	F	P	I	E	V	V	L	D	F	A	P	L	T	P	L	S	E	V	Q	E	G	E	Q	V	Q	V	X	V	A	A	A	R	Q	E	A	V	A	G	V	L	E	A	L	R	G	A	G	L	V	P
Template Known Secondary structure		G																									G	G	G		S	S											S	S		G	G	G	S		T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		S	H	V	L	D	E	P	T	A	V	A	D	L	L	.	.	.	.	.	.	.	Q	L	D	N	A	G	V	V	D	I	G	G	G	T	T	G	I	A	I	V	K	K	G	K	V	T	Y	S	A	D	E	A	T	G	G	H	H	I	S	L	T	L	A	G	N	R	R	I	S	L	E	E	A	E	Q	Y	K	R	G
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	L	D	V	K	P	F	A	G	L	Y	P	L	E	A	R	L	A	E	E	P	D	R	V	F	L	V	L	D	I	G	A	E	S	T	S	L	V	L	L	R	G	D	K	P	L	A	V	R	V	L	T	L	S	G	K	D	F	T	E	A	I	A	R	S	F	N	L	D	L	L	A	A	E	E	V	K	R	T
Template Known Secondary structure											T	T	G	G	G						T	S	T	T										S	S									T	T									S		S												T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																													.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	G	E	E	I	W	P	A	V	K	P	V	Y	E	K	M	A	D	I	V	A	R	H	I	E	G	Q	.	.	.	.	G	I	T	D	L	W	L	A	G	G	S	C	M	Q	P	G	V	A	E	L	F	R	K	Q	F	P	A	L	Q	V	H	L	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																								.	.	.	.																										.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																																					.
Template Sequence		Y	G	R	.	I	Y	D	A	I	R	P	V	L	V	E	L	T	Q	E	L	R	R	S	L	E	F	F	R	I	Q	L	S	P	E	V	G	Y	L	L	G	G	G	S	K	L	R	G	L	A	S	L	L	T	D	T	L	.	G	V	N	L	E	P	V	N	P	W	E	A	V	A	V	D	P	K	R	F	E	S	E
Template Known Secondary structure		T			.																														S						S	G	G	G	G	S	T	T										.	T	S							G	G	G	G	S	B			T	T	T	S
Template Predicted Secondary structure					.																																																					.
Template SS confidence
		248	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
							255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	H	S	L	F	M	T	P	L	A	I	A	S	S	G	R	E	K
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		Q	L	Q	E	I	G	P	E	F	A	V	A	L	G	L	A	L	R	G	V	E	P
Template Known Secondary structure																					T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions