Job Description P77277 Confidence 99.52% Date Thu Jan 5 12:27:07 GMT 2012 Rank 34 Aligned Residues 238 % Identity 22% Template c2dpnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 Resolution 2.80 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																				.	.	.																												.	.	.											.	.	.
Query SS confidence																																				.	.	.																												.	.	.											.	.	.
Query Sequence		L	W	L	G	V	D	L	G	T	C	D	V	V	S	M	V	V	D	R	D	G	Q	P	V	A	V	C	L	D	W	A	D	V	V	.	.	.	R	D	G	I	V	W	D	F	F	G	A	V	T	I	V	R	R	H	L	D	T	L	E	Q	Q	F	G	.	.	.	R	R	F	S	H	A	A	T	S	F	.	.	.
Query Conservation																																				.	.	.																												.	.	.											.	.	.
Alig confidence																																				.	.	.																												.	.	.											.	.	.
Template Conservation
Template Sequence		F	L	L	A	L	D	Q	G	T	T	S	S	R	A	I	L	F	T	L	E	G	R	P	V	A	V	A	K	R	E	F	R	Q	L	Y	P	K	P	G	W	V	E	H	D	P	L	E	I	W	E	T	T	L	W	A	A	R	E	V	L	R	R	A	G	A	E	A	G	E	V	L	A	L	G	I	T	N	Q	R	E
Template Known Secondary structure										S	S									S	S	S													B		S	S	T	T																									T			T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	L	L	W	D	R	K	T	G	K	P	L	H	N	A	I	V	W	Q	D	R	R	T	T	P	L	C	E	A	L	R	A	K	G	L	E	P	L	F	R	E	R	T	G	L	L	F	D	P	Y	F	S	G	T	K	L	V	W	L	L	E	N	V	P	G	L	K	A	R	A	E	G	G	G	V	A	F	G	T
Template Known Secondary structure								T	T	T	T			S	S					T	T														T	T							T	T	T	S			S		S	S	S												S	T	T					T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
																																																								101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	G	T	D	P	R	I	S	I	N	V	L	E	S	A	G	L	E	V	S	H	V	L	D	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	T	W	L	I	W	N	L	T	G	G	K	V	H	A	T	D	P	T	N	A	S	R	T	L	L	F	N	L	H	T	L	A	W	D	P	E	L	L	E	A	L	G	I	P	A	A	L	L	P	E	V	R	P	S	D	G	D	F	G	E	T	L	P	E	L	L	G	A	P	V	P	I	R	G	V	L	G	D
Template Known Secondary structure											T	T	T	S				B							T	S	T	T	B		S	S	S	S	S	B								T				T	T	S				B			T	T	S				B							S	S			B
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		127	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.																					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure											.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	A	V	A	D	L	L	Q	.	.	L	D	N	A	G	V	V	D	I	G	G	G	T	T	G	I	A	I	V	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	V	T	Y	S	A	D	E	A	T	G	G	H	H	I	S	L	T	L	A	G	N	R	R	I	S	L
Query Conservation											.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	A	A	L	F	G	Q	A	A	L	G	G	G	E	G	K	C	T	Y	G	T	G	A	F	L	L	L	N	T	G	K	R	P	V	L	S	E	K	G	L	L	A	T	V	A	W	S	L	G	G	R	A	T	Y	A	L	E	G	S	L	F	V	A	G	A	A	V	G	W	L	K	E	V	G	L	I	R	E	S
Template Known Secondary structure									T	T			S	T	T							S	S	S									S	S					S	S	S										T	T											S		S	T								T	T	T	S	S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		185	.	.	.	.	190	.	.	.																																		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		E	E	A	E	Q	Y	K	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	E	E	I	W	P	A	V	K	P	V	Y	E	K	M	A	D	I	V	A	R	H	I	E	.	.	.	.	.	.	G	Q	G	I	T	D	L
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	V	E	A	L	A	A	S	V	E	D	T	G	D	V	Y	F	V	P	A	F	T	G	L	G	A	P	Y	W	D	P	Y	A	R	G	T	L	L	G	L	T	R	G	T	S	R	A	H	L	A	R	A	A	L	E	G	V	A	F	Q	V	R	D	V	V	L	A	M	E	E	E	A	G	V	R	L	K	V	L
Template Known Secondary structure		T	T					G	G	G		S	S		S	S							T	T				T	T	T			T	T										T	T																												S	S	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	A	G	G	S	C	M	Q	P	G	V	A	E	L	F	R	K	Q	F	P	A	L	Q	V	H	L	P	Q	H	S	L	F	M	T	P	L	A	I	A	S	S	G	R
Query Conservation
Alig confidence																						.												.
Template Conservation																						.												.
Template Sequence		K	A	D	G	G	M	A	Q	N	R	L	F	L	K	I	Q	A	D	L	L	.	G	V	P	V	A	V	P	E	V	T	E	.	T	T	A	L	G	A	A	L	M	A	G
Template Known Secondary structure					S	G	G	G	G													.	T	S						S				.
Template Predicted Secondary structure																						.												.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions