Return to main results Retrieve Phyre Job Id

Job DescriptionP77277
Confidence53.01%DateThu Jan 5 12:27:07 GMT 2012
Rank164Aligned Residues216
% Identity18%Templatec1x3nA_
PDB info PDB header:transferaseChain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40....... ..50.........60.........70.... .....80.........90........
Predicted Secondary structure 





.











.........





Query SS confidence 


















.


























. . . . . . . . .























Query Sequence  PLWLGVDLGTCDVVSMVVD. RDGQPVAVCLDWADVVRDGIVWDFFGA. . . . . . . . . VTIVRRHLDTLEQQFGRRFSHAAT
Query Conservation 

 







  
 

 
.    

            
 
 
   
.........   

     
    
  
   
 
Alig confidence 


















.


























.........























Template Conservation    




 



 
 


          
                             

  
   
        
 


Template Sequence  PVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIG
Template Known Secondary structure 

SSTTT

STTSSS

STTS


SS

TTT
TTT
Template Predicted Secondary structure 











































Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   99100...... ...110.........120........ .130....
Predicted Secondary structure 




...............................




......
.......
Query SS confidence 







. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .





















. . . . . .





. . . . . . .
Query Sequence  SFPPGTDP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RISINVLESAGLEVSHVLDEPT. . . . . . AVADLL. . . . . . .
Query Conservation   

     ...............................         


    

 
  ......


   .......
Alig confidence 







...............................





















......





.......
Template Conservation 






        
   
   
     






  
  
       
    








  

  
  
 

    
Template Sequence  HRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYF
Template Known Secondary structure  S

TTT
SS


GGGS
TTSTTGGGGG



SS
Template Predicted Secondary structure 








































Template SS confidence 















































































   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   135....140.........150.........160.... .....170.
Predicted Secondary structure  ..............................












...........




..
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .





























. . . . . . . . . . .






. .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QLDNAGVVDIGGGTTGIAIVKKGKVTYSAD. . . . . . . . . . . EATGGHH. .
Query Conservation  ..............................      





  
 
 
   
       ...........   

  ..
Alig confidence  ..............................


















.









...........






..
Template Conservation     










   

 
 
  


      






 
 

 

.  








 





 
 



 


 
Template Sequence  SSLGVRRYGFHGTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAV. RNGQSVDTSMGMTPLEGLMMGTRSGDVDFG
Template Known Secondary structure  TT





S
TT
BTTB
SSS.TTS

SSTTSSS

SS


S

Template Predicted Secondary structure 














.






















Template SS confidence 















































































   165....170.........180.........190.........200.........210... ......220.........230.........240...
 
   172.......180...... ...190.........200.........210.........220. ......
Predicted Secondary structure 


.......................


.

Query SS confidence 














. . . . . . . . . . . . . . . . . . . . . . .


































.





Query Sequence  ISLTLAGNRRISLEE. . . . . . . . . . . . . . . . . . . . . . . AEQYKRGHGEEIWPAVKPVYEKMADIVARHIEGQG. ITDLWL
Query Conservation      

  
 
   
.......................

  
              
      
        .
  


Alig confidence 














.......................


































.





Template Conservation   
  
      
  
    

  


 
 

 
 
 
 
      

  
 

 
 
 


 
 


  
 








Template Sequence  AMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIF
Template Known Secondary structure  T

S
SS
S
TT
TT
SS

Template Predicted Secondary structure 



















Template SS confidence 















































































   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   228.230.. .......240.....
Predicted Secondary structure 



.

Query SS confidence 




.












Query Sequence  AGGSC. MQPGVAELFRKQF
Query Conservation   

 
. 

 
   
   
Alig confidence 




.












Template Conservation 







  

  
   
Template Sequence  TGGIGENSVLIRQLVIEHL
Template Known Secondary structure 
TT
Template Predicted Secondary structure 








Template SS confidence 


















   324.....330.........340..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions