Job Description P75913 Confidence 100.00% Date Thu Jan 5 12:15:57 GMT 2012 Rank 27 Aligned Residues 278 % Identity 19% Template c3gvxA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerate dehydrogenase related protein; PDBTitle: crystal structure of glycerate dehydrogenase related2 protein from thermoplasma acidophilum Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	I	I	F	Y	H	P	T	F	D	T	Q	W	W	I	E	A	L	R	K	A	I	P	Q	A	R	V	R	A	W	K	S	G	D	N	D	S	A	D	Y	A	L	V	W	H	P	P	V	E	M	L	A	G	R	D	L	K	A	V	F	A	L	G	A	G	V	D	S	I	L	S	K	L	Q	A	H	P	E	M
Query Conservation
Alig confidence											.	.																																.	.	.	.	.
Template Conservation											.	.																																.	.	.	.	.
Template Sequence		L	D	V	Y	V	N	F	P	A	.	.	D	G	H	V	R	E	I	A	K	T	V	L	D	G	F	D	L	H	W	Y	P	D	Y	Y	D	A	E	A	Q	V	I	.	.	.	.	.	K	D	R	Y	V	L	G	K	R	T	K	X	I	Q	A	I	S	A	G	V	D	H	I	D	V	N	G	I	P	E	N	V	V
Template Known Secondary structure								S			.	.												T	T	T	S					T	T	S					S					.	.	.	.	.	S	S						S	S								S	S			T	T	S		G	G	G	S		T	T	S
Template Predicted Secondary structure											.	.																																.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	P	S	V	P	L	F	R	L	E	D	T	G	M	G	E	Q	M	Q	E	Y	A	V	S	Q	V	L	H	W	F	R	R	F	D	D	Y	R	I	Q	Q	N	S	S	H	W	Q	P	L	P	E	Y	H	R	E	D	F	T	I	G	I	L	G	A	G	V	L	G	S	K	V	A	Q	S	L	Q	T	W	R	F
Query Conservation
Alig confidence							.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		L	C	S	N	A	.	.	.	.	.	.	.	G	A	Y	S	I	S	V	A	E	H	A	F	A	L	L	L	A	H	A	K	N	I	L	E	N	N	E	L	X	K	A	G	I	F	R	Q	S	P	T	T	L	L	Y	G	K	A	L	G	I	L	G	Y	G	G	I	G	R	R	V	A	H	L	A	K	A	F	G	X
Template Known Secondary structure							.	.	.	.	.	.	.																				T	T										T	T											T	T									S														T
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.								.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	R	C	W	S	R	T	R	K	S	W	P	G	V	Q	S	F	A	G	R	E	E	L	S	A	F	L	S	Q	C	R	V	L	I	N	L	L	P	N	T	P	E	T	V	G	I	I	N	Q	Q	L	L	E	K	L	P	D	G	A	Y	L	L	N	L	A	R	G	V	H	V	V	E	D	D	L	L	A	A	L
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		R	V	I	A	Y	T	R	S	S	V	D	Q	N	V	.	.	.	D	V	I	S	E	S	P	A	D	L	F	R	Q	S	D	F	V	L	I	A	I	P	L	T	D	K	T	R	G	X	V	N	S	R	L	L	A	N	A	R	K	N	L	T	I	V	N	V	A	R	A	D	V	V	S	K	P	D	X	I	G	F	L
Template Known Secondary structure								S	S				T	T		.	.	.	S				S	S									S										T	T	T	T	T		B	S					T	T			T	T							S		G	G	G	B
Template Predicted Secondary structure																.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.				.	.
Query SS confidence																																									.				.	.
Query Sequence		D	S	G	K	V	K	G	A	M	L	D	V	F	N	R	E	P	L	P	P	E	S	P	L	W	Q	H	P	R	V	T	I	T	P	H	V	A	A	I	.	T	R	P	.	.	A	E	A	V	E	Y	I	S	R	T	I	A	Q	L	E	K
Query Conservation																																									.				.	.
Alig confidence																										.	.	.													.				.	.
Template Conservation																										.	.	.
Template Sequence		K	E	R	S	D	V	W	Y	L	S	D	V	W	W	N	E	P	E	I	T	E	T	N	L	.	.	.	R	N	A	I	L	S	P	H	V	A	G	G	X	S	G	E	I	X	D	I	A	I	Q	L	A	F	E	N	V	R	N	F	F	E
Template Known Secondary structure					T	T						S			T	T	T	T	S			S				.	.	.	S	S						S		S	S		B	T	T	B																	T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions