Job Description P75913 Confidence 100.00% Date Thu Jan 5 12:15:57 GMT 2012 Rank 25 Aligned Residues 300 % Identity 17% Template c2w2kB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a. Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.		.	.
Predicted Secondary structure											.																												.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.											.
Query SS confidence											.																												.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.											.
Query Sequence		D	I	I	F	Y	H	P	T	F	.	D	T	Q	W	W	I	E	A	L	R	K	A	I	P	Q	A	R	V	R	A	W	K	S	G	D	N	D	.	.	.	.	.	.	.	.	.	.	.	.	S	A	D	Y	A	L	V	W	.	.	.	.	.	.	.	.	.	.	H	P	P	V	E	M	L	A	G	R	.	D	L
Query Conservation											.																												.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.											.
Alig confidence											.													.	.	.													.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.											.
Template Conservation																								.	.	.
Template Sequence		R	V	L	L	L	G	D	P	A	R	H	L	D	D	L	W	S	D	F	Q	Q	K	.	.	.	F	E	V	I	P	A	N	L	T	T	H	D	G	F	K	Q	A	L	R	E	K	R	Y	G	D	F	E	A	I	I	K	L	A	V	E	N	G	T	E	S	Y	P	W	N	A	D	L	I	S	H	L	P	S	S	L
Template Known Secondary structure							S	S			S	S												.	.	.	S																			T	T	T	T				S						S	T	T	T	T	G	G	G			B						T	T	S		T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		K	A	V	F	A	L	G	A	G	V	D	S	I	L	S	K	L	Q	A	H	P	E	M	L	N	P	S	V	P	L	F	R	L	E	D	T	G	M	G	E	Q	M	Q	E	Y	A	V	S	Q	V	L	H	W	F	R	R	F	D	D	Y	R	I	Q	Q	N	S	S	H	W	Q	P	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.
Template Sequence		K	V	F	A	A	A	G	A	G	F	D	W	L	D	L	D	A	L	N	E	R	G	V	A	F	A	N	S	R	.	.	.	.	.	.	G	A	G	D	T	A	T	S	D	L	A	L	Y	L	I	L	S	V	F	R	L	A	S	Y	S	E	R	A	A	R	T	G	D	P	E	T	F	N	R	V	H	L	E	I	G
Template Known Secondary structure							S	S	S			T	T	B								T	T							T	.	.	.	.	.	.	T	T	T																		T									T	T														T
Template Predicted Secondary structure																															.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																													.																							.	.
Query SS confidence																													.																							.	.
Query Sequence		L	P	E	Y	H	R	E	D	F	T	I	G	I	L	G	A	G	V	L	G	S	K	V	A	Q	S	L	.	Q	T	W	R	F	P	L	R	C	W	S	R	T	R	K	S	W	P	G	V	Q	S	.	.	F	A	G	R	E	E	L	S	A	F	L	S	Q	C	R	V	L	I	N	L	L	P	N	T	P	E	T	V
Query Conservation																													.																							.	.
Alig confidence																													.																							.	.
Template Conservation
Template Sequence		K	S	A	H	N	P	R	G	H	V	L	G	A	V	G	L	G	A	I	Q	K	E	I	A	R	K	A	V	H	G	L	G	M	K	L	V	Y	Y	D	V	A	P	A	D	A	E	T	E	K	A	L	G	A	E	R	V	D	S	L	E	E	L	A	R	R	S	D	C	V	S	V	S	V	P	Y	M	K	L	T	H
Template Known Secondary structure		T	T				S	T	T	S								S													T	T									S	S											T					S	S									S									S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		G	I	I	N	Q	Q	L	L	E	K	L	P	D	G	A	Y	L	L	N	L	A	R	G	V	H	V	V	E	D	D	L	L	A	A	L	D	S	G	K	V	K	G	A	M	L	D	V	F	N	R	E	P	L	P	P	E	S	P	L	W	Q	H	P	R	V	T	I	T	P	H	V	A	A	I	T	R	P	A	.	.
Query Conservation																																																																																.	.
Alig confidence																																																						.																										.	.
Template Conservation																																																						.
Template Sequence		H	L	I	D	E	A	F	F	A	A	M	K	P	G	S	R	I	V	N	T	A	R	G	P	V	I	S	Q	D	A	L	I	A	A	L	K	S	G	K	L	L	S	A	G	L	D	V	H	E	F	E	P	.	N	V	S	K	E	L	I	E	M	K	H	V	T	L	T	T	H	I	G	G	V	A	I	E	T	F	H
Template Known Secondary structure		T		B								S		T	T							S		G	G	G	B											T	T	S							S	S		T	T	T	T	.	S							T	S	S	S					S	S		T	T		S
Template Predicted Secondary structure																																																						.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		E	A	V	E	Y	I	S	R	T	I	A	Q	L	E	.	K	G	E	R	V	C	G	Q	V	D	R	A	R	G
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		E	F	E	R	L	T	M	T	N	I	D	R	F	L	L	Q	G	K	P	L	L	T	P	A	G	K	V	F	A
Template Known Secondary structure																	T					S	S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions