Job Description P75913 Confidence 99.92% Date Thu Jan 5 12:15:57 GMT 2012 Rank 50 Aligned Residues 260 % Identity 13% Template c2vhyB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alanine dehydrogenase; PDBTitle: crystal structure of apo l-alanine dehydrogenase from2 mycobacterium tuberculosis Resolution 2.3 Å

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		1	.	.	.	.	.	.	.	.	10	.								.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.																									.	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	I	I	F	Y	H	P	T	F	D	.	.	.	.	.	.	.	T	Q	W	W	I	E	A	L	R	K	A	I	P	Q	A	R	V	R	A	W	K	S	G	D	N	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	Y	A	L	V	W	H	P	P	V
Query Conservation													.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.												.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence		M	R	V	G	I	P	T	E	T	K	N	N	E	F	R	V	A	I	T	P	A	G	V	A	E	L	T	R	R	.	.	G	H	E	V	L	I	Q	A	G	A	G	E	G	S	A	I	T	D	A	D	F	K	A	A	G	A	Q	L	V	G	T	A	D	Q	V	W	A	D	A	D	L	L	L	K	V	K	E	P	I
Template Known Secondary structure											S	T	T					S											T	T	.	.	T						B	T	T	T	T	G	G	G	T			S					T	T					B	S	S						S	S		S					S	S
Template Predicted Secondary structure																															.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	M	L	A	G	R	D	L	K	A	V	F	A	L	G	A	G	V	D	S	I	L	S	K	L	Q	A	H	P	E	M	L	N	P	S	V	P	L	F	R	L	E	D	T	G	M	G	E	Q	M	Q	E	Y	A	V	S	Q	V	L	H	W	F	R	R	F	D	D	Y	R	I	Q	Q	N	S	S	H	W
Query Conservation		.	.	.
Alig confidence		.	.	.																																						.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		A	A	E	Y	G	R	L	R	H	G	Q	I	L	F	T	F	L	H	L	A	A	S	R	A	C	T	D	A	L	L	D	S	G	T	T	S	I	A	Y	E	.	.	.	.	.	.	T	V	Q	T	A	D	G	A	L	P	L	L	A	P	M	S	E	V	A	G	R	L	A	A	Q	V	G	A	Y	H	L	M	R	T
Template Known Secondary structure		G	G	G	G	G	G			S	S	S								G	G	G										T	T	T						G	G	.	.	.	.	.	.	G				T	T	S			T	T	T																		T	T	S	G	G
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		127	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.	.	190	.
Predicted Secondary structure							.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	L	P	E	.	.	.	.	.	.	Y	H	R	E	D	F	T	I	G	I	L	G	A	G	V	L	G	S	K	V	A	Q	S	L	Q	T	W	R	F	P	L	R	C	W	S	R	T	R	K	S	W	P	G	V	Q	S	F	A	G	R	E	.	.	.	.	.	.	.	.	.	E	L	S	A	F	L	S	Q	C
Query Conservation							.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	G	R	G	V	L	M	G	G	V	P	G	V	E	P	A	D	V	V	V	I	G	A	G	T	A	G	Y	N	A	A	R	I	A	N	G	M	G	A	T	V	T	V	L	D	I	N	I	D	K	L	R	Q	L	D	A	E	F	C	G	R	I	H	T	R	Y	S	S	A	Y	E	L	E	G	A	V	K	R	A
Template Known Secondary structure		G	T	S					T	T		B	T	T	B											S													T	T								S												T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.										.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		R	V	L	I	N	L	L	P	N	T	P	E	T	V	G	I	I	N	Q	Q	L	L	E	K	L	P	D	G	A	Y	L	L	N	L	A	R	G	V	H	V	V	E	D	D	L	L	A	A	L	D	S	.	.	.	.	.	.	.	.	.	G	K	V	K	G	A	M	L	D	V	F	N	R	E	P	L	P	P	E	S
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	V	I	G	A	V	L	V	.	.	.	.	.	.	.	.	.	.	.	.	V	A	H	M	K	P	G	A	V	L	V	D	I	T	L	F	Y	C	M	P	A	S	V	P	K	T	S	T	Y	A	L	T	N	A	T	M	P	Y	V	L	E	L	A	D	H	G	W	R	A	A	C	R	S	N	P	A	L	A	K
Template Known Secondary structure		S									.	.	.	.	.	.	.	.	.	.	.	.						T	T													G	G	G	S																														S						T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.													.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	W	Q	H	P	R	V	T	I	T	P	H	V	A	A	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	S	T	H	E	G	A	L	L	S	E	R	V	A	T	D	L
Template Known Secondary structure		T					T	T											T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions