Job Description P75913 Confidence 100.00% Date Thu Jan 5 12:15:57 GMT 2012 Rank 19 Aligned Residues 297 % Identity 22% Template c2pi1C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase from aquifex2 aeolicus complexed with nad and lactic acid Resolution 2.12 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.								.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.										.	.	.	.
Query Sequence		M	D	I	I	F	Y	H	P	T	F	D	T	Q	W	W	I	E	A	L	R	K	A	I	P	Q	A	R	V	R	A	W	K	S	G	D	N	D	.	.	.	.	.	.	.	S	A	D	Y	A	L	V	W	H	.	.	.	.	P	P	V	E	M	L	A	G	R	D	L	K	A	V	F	A	L	G	A	G	V	D	S
Query Conservation																																							.	.	.	.	.	.	.										.	.	.	.
Alig confidence											.	.	.																										.	.	.	.	.	.	.										.	.	.	.
Template Conservation											.	.	.
Template Sequence		X	N	V	L	F	T	S	V	P	.	.	.	Q	E	D	V	P	F	Y	Q	E	A	L	K	D	L	S	L	K	I	Y	T	T	D	V	S	K	V	P	E	N	E	L	K	K	A	E	L	I	S	V	F	V	Y	D	K	L	T	E	E	L	L	S	K	X	P	R	L	K	L	I	H	T	R	S	V	G	F	D	H
Template Known Secondary structure								S			.	.	.	G	G	G								T	T	T	S						S	S		G	G	G	S									S						T	T	S		B						T	T		T	T							S	S	S			T	T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		I	L	S	K	L	Q	A	H	P	E	M	L	N	P	S	V	P	L	F	R	L	E	D	T	G	M	G	E	Q	M	Q	E	Y	A	V	S	Q	V	L	H	W	F	R	R	F	D	D	Y	R	I	Q	Q	N	S	S	H	W	Q	P	L	.	.	.	P	E	Y	H	R	E	D	F	T	I	G	I	L	G	A	G	V
Query Conservation																																																														.	.	.
Alig confidence																			.	.	.	.	.	.																																						.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		I	D	L	D	Y	C	K	K	K	G	I	L	V	T	H	I	P	.	.	.	.	.	.	A	Y	S	P	E	S	V	A	E	H	T	F	A	X	I	L	T	L	V	K	R	L	K	R	I	E	D	R	V	K	K	L	N	F	S	Q	D	S	E	I	L	A	R	E	L	N	R	L	T	L	G	V	I	G	T	G	R
Template Known Secondary structure		B									T							T	.	.	.	.	.	.	T	S																		T	T										T	T						G	G	G					G	G	G	S								S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.							.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	K	V	A	Q	S	L	Q	T	W	R	F	P	L	R	C	W	S	R	T	R	K	S	W	P	G	V	Q	S	F	A	G	R	E	E	L	S	A	F	L	S	Q	C	R	V	L	I	N	L	L	P	N	T	P	E	T	V	G	I	I	N	Q	Q	L	L	E	K	L	P	D	G	A	Y	L	L	N	L	A
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		I	G	S	R	V	A	X	Y	G	L	A	F	G	X	K	V	L	C	Y	D	V	V	K	R	E	D	L	K	.	E	K	G	C	V	Y	T	S	L	D	E	L	L	K	E	S	D	V	I	S	L	H	V	P	Y	T	K	E	T	H	H	X	I	N	E	E	R	I	S	L	X	K	D	G	V	Y	L	I	N	T	A
Template Known Secondary structure													T	T								S	S							.			T														S										T	T	T	T	T		B								S		T	T							S
Template Predicted Secondary structure																														.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		R	G	V	H	V	V	E	D	D	L	L	A	A	L	D	S	G	K	V	K	G	A	M	L	D	V	F	N	R	E	P	L	P	P	E	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	W	Q	H	P	R	V	T	I	T	P	H	V	A	A	I	T	R	P	.	.	A	E	A	V	E	Y	I
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		R	G	K	V	V	D	T	D	A	L	Y	R	A	Y	Q	R	G	K	F	S	G	L	G	L	D	V	F	E	D	E	E	I	L	I	L	K	K	Y	T	E	G	K	A	T	D	K	N	L	K	I	L	E	L	A	C	K	D	N	V	I	I	T	P	H	I	A	Y	Y	T	D	K	S	L	E	R	I	R	E	E	T
Template Known Secondary structure			G	G	G	B											T	T								S			T	T						T	T	G	G	G	G	T														T	S	T	T						S		T	T		S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	T	I	A	Q	L	E	K	G	E	R	V	C	G	Q	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	V	V	K	A	F	V	K	G	D	L	E	Q	I	K	G	N
Template Known Secondary structure										S	S		T	T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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