Job Description P75913 Confidence 100.00% Date Thu Jan 5 12:15:57 GMT 2012 Rank 9 Aligned Residues 293 % Identity 20% Template c2eklA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: structure of st1218 protein from sulfolobus tokodaii Resolution 1.77 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.								.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.										.	.	.	.
Query Sequence		M	D	I	I	F	Y	H	P	T	F	D	T	Q	W	W	I	E	A	L	R	K	A	I	P	Q	A	R	V	R	A	W	K	S	G	D	N	D	.	.	.	.	.	.	.	S	A	D	Y	A	L	V	W	H	.	.	.	.	P	P	V	E	M	L	A	G	R	D	L	K	A	V	F	A	L	G	A	G	V	D	S
Query Conservation																																							.	.	.	.	.	.	.										.	.	.	.
Alig confidence											.	.												.	.														.	.	.	.	.	.	.										.	.	.	.
Template Conservation											.	.												.	.
Template Sequence		V	K	A	L	I	T	D	P	I	.	.	D	E	I	L	I	K	T	L	R	E	K	.	.	G	I	Q	V	D	Y	M	P	E	I	S	K	E	E	L	L	N	I	I	G	N	Y	D	I	I	V	V	R	S	R	T	K	V	T	K	D	V	I	E	K	G	K	K	L	K	I	I	A	R	A	G	I	G	L	D	N
Template Known Secondary structure								S			.	.											T	.	.	T							T	T										G	G	G		S						S	S	S		B									T	T								S	S			T	T
Template Predicted Secondary structure											.	.												.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	S	K	L	Q	A	H	P	E	M	L	N	P	S	V	P	L	F	R	L	E	D	T	G	M	G	E	Q	M	Q	E	Y	A	V	S	Q	V	L	H	W	F	R	R	F	D	D	Y	R	I	Q	Q	N	S	S	H	W	Q	P	L	P	E	Y	H	R	E	D	F	T	I	G	I	L	G	A	G	V	L	G	S
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		I	D	T	E	E	A	E	K	R	N	I	K	V	V	Y	A	P	.	.	.	.	.	.	G	A	S	T	D	S	A	V	E	L	T	I	G	L	M	I	A	A	A	R	K	M	Y	T	S	M	A	L	A	K	S	G	I	F	K	K	I	E	G	L	E	L	A	G	K	T	I	G	I	V	G	F	G	R	I	G	T
Template Known Secondary structure		B								T	T							T	.	.	.	.	.	.	T	T	T																		T										T	T											T	T							S		S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	Q	S	L	Q	T	W	R	F	P	L	R	C	W	S	R	T	R	K	S	W	P	G	V	Q	S	F	A	G	R	E	E	L	S	A	F	L	S	Q	C	R	V	L	I	N	L	L	P	N	T	P	E	T	V	G	I	I	N	Q	Q	L	L	E	K	L	P	D	G	A	Y	L	L	N	L	A	R	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	G	I	I	A	N	A	M	G	M	K	V	L	A	Y	D	I	L	D	I	R	E	K	A	E	K	I	N	A	K	A	V	S	L	E	E	L	L	K	N	S	D	V	I	S	L	H	V	T	V	S	K	D	A	K	P	I	I	D	Y	P	Q	F	E	L	M	K	D	N	V	I	I	V	N	T	S	R	A	V
Template Known Secondary structure										T	T								S	S									T	T														S										T	T	S			S	B								S		T	T						S	S		G	G
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																			.	.																					.	.
Query SS confidence																																			.	.																					.	.
Query Sequence		H	V	V	E	D	D	L	L	A	A	L	D	S	G	K	V	K	G	A	M	L	D	V	F	N	R	E	P	L	P	P	E	S	.	.	P	L	W	Q	H	P	R	V	T	I	T	P	H	V	A	A	I	T	R	P	.	.	A	E	A	V	E	Y	I	S	R	T	I	A	Q	L	E	K	G	E	R	V	C
Query Conservation																																			.	.																					.	.
Alig confidence																																			.	.																					.	.
Template Conservation
Template Sequence		A	V	N	G	K	A	L	L	D	Y	I	K	K	G	K	V	Y	A	Y	A	T	D	V	F	W	N	E	P	P	K	E	E	W	E	L	E	L	L	K	H	E	R	V	I	V	T	T	H	I	G	A	Q	T	K	E	A	Q	K	R	V	A	E	M	T	T	Q	N	L	L	N	A	M	K	E	L	G	M	I
Template Known Secondary structure		G	B											T	T								S			S	S	S	S			S									S	T	T						S		T	T		S																						T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions