Job Description P75913 Confidence 99.95% Date Thu Jan 5 12:15:57 GMT 2012 Rank 43 Aligned Residues 267 % Identity 17% Template c1pjcA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (l-alanine dehydrogenase); PDBTitle: l-alanine dehydrogenase complexed with nad Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.								.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																								.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence														.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		M	D	I	I	F	Y	H	P	T	F	D	T	.	.	.	.	.	.	.	Q	W	W	I	E	A	L	R	K	A	I	P	Q	A	R	V	R	A	W	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	N	D	S	A	D	Y	A	L	V	W	H	P	P	V	.
Query Conservation														.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence														.	.	.	.	.	.	.											.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																															.	.
Template Sequence		M	E	I	G	V	P	K	E	I	K	N	Q	E	F	R	V	G	L	S	P	S	S	V	R	T	L	V	E	A	.	.	G	H	T	V	F	I	E	T	Q	A	G	I	G	A	G	F	A	D	Q	D	Y	V	Q	A	G	A	Q	V	V	P	S	A	K	D	A	W	S	R	E	M	V	V	K	V	K	E	P	L	P
Template Known Secondary structure											S	T	T					S											T	T	.	.	T							T	T	T	T	G	G	G	T										T					S	S						T	S	S					S	S				G
Template Predicted Secondary structure																															.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	M	L	A	G	R	D	L	K	A	V	F	A	L	G	A	G	V	D	S	I	L	S	K	L	Q	A	H	P	E	M	L	N	P	S	V	P	L	F	R	L	E	D	T	G	M	G	E	Q	M	Q	E	Y	A	V	S	Q	V	L	H	W	F	R	R	F	D	D	Y	R	I	Q	Q	N	S	S	H	W	Q
Query Conservation		.	.
Alig confidence		.	.																																						.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		A	E	Y	D	L	M	Q	K	D	Q	L	L	F	T	Y	L	H	L	A	A	A	R	E	L	T	E	Q	L	M	R	V	G	L	T	A	I	A	Y	E	.	.	.	.	.	.	T	V	E	L	P	N	R	S	L	P	L	L	T	P	M	S	I	I	A	G	R	L	S	V	Q	F	G	A	R	F	L	E	R	Q	Q
Template Known Secondary structure		G	G	G	G	G			T	T									G	G	G												T						G	G	.	.	.	.	.	.	G				T	T	S			T	T	T																			T	S	G	G	G
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		128	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.										.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Query Sequence		P	L	P	E	Y	.	.	.	.	.	.	H	R	E	D	F	T	I	G	I	L	G	A	G	V	L	G	S	K	V	A	Q	S	L	Q	T	W	R	F	P	L	R	C	W	S	R	T	R	K	S	.	.	.	.	.	.	.	.	.	W	P	G	V	Q	S	F	A	G	R	E	E	L	S	A	F	L	S	Q	C	R
Query Conservation							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	R	G	V	L	L	G	G	V	P	G	V	K	P	G	K	V	V	I	L	G	G	G	V	V	G	T	E	A	A	K	M	A	V	G	L	G	A	Q	V	Q	I	F	D	I	N	V	E	R	L	S	Y	L	E	T	L	F	G	S	R	V	E	L	L	Y	S	N	S	A	E	I	E	T	A	V	A	E	A	D
Template Known Secondary structure		T	S					T	T		B	T	T	B											S													T	T								S													G	G	G	S																T		S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		193	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																													.	.
Query SS confidence								.																													.	.
Query Sequence		V	L	I	N	L	L	.	P	N	T	P	E	T	V	G	I	I	N	Q	Q	L	L	E	K	L	P	D	G	A	Y	L	L	N	L	A	.	.	R	G	V	H	V	V	E	D	D	L	L	A	A	L	D	S	G	K	V	K	G	A	M	L	D	V	F	N	R	E	P	L	P	P	E	S	P	L	W	Q	H	P	R
Query Conservation								.																													.	.
Alig confidence								.																													.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	I	G	A	V	L	V	P	G	R	R	A	P	I	L	V	P	A	S	L	V	E	Q	M	R	T	G	S	V	I	V	D	V	A	V	D	Q	G	G	C	V	E	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	T	S	H	T	Q	P	T	Y	E	V	F	G
Template Known Secondary structure										T	T	S	S					B						T	T	S		T	T						T	T		T	T			S	B	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S						T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																						.	.	280	.	.	.	.	.	.	.	.	.	290	.
		270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		V	T	I	.	.	T	P	H	V	A	A	I	T	R	P	A	E	A	V	E	Y	I	S	R	T	I	A	Q	L	E
Query Conservation					.	.
Alig confidence					.	.									.
Template Conservation															.
Template Sequence		V	V	H	Y	G	V	P	N	M	P	G	A	V	.	P	W	T	A	T	Q	A	L	N	N	S	T	L	P	Y	V
Template Known Secondary structure								S		G	G	G	G		.
Template Predicted Secondary structure															.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions