 |
Job Description | P75913 | Confidence | 98.62% | Date | Thu Jan 5 12:15:57 GMT 2012 |
Rank | 122 | Aligned Residues | 97 |
% Identity | 21% | Template | c1gpjA_ |
PDB info |
PDB header:reductase | Chain: A: PDB Molecule:glutamyl-trna reductase; |
PDBTitle: glutamyl-trna reductase from methanopyrus kandleri
|
Resolution | 1.95 Å |
|
 |
  |   |
133 | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | |
. | . | . | . | . | . | . | . | . | 170 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | R | E | D | F | T | I | G | I | L | G | A | G | V | L | G | S | K | V | A | Q | S | L | Q | T | W | R | F | . |
P | L | R | C | W | S | R | T | R | K | . |
. |
. |
. |
. |
S | W | P | G | V | Q | S | F | A | G | R | E | E | L | S | A | F | L | S | Q | C | R | V | L | I | N | L | L | P | N | T | P | E | T | V | G |
Query Conservation |   |
  |
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |
|
|
|   | . |   |
|   |   |   |   |
|   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|
|
|   |   |   |   |
|
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|
|
|
|
|
|   |
|
|   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|   |
|   |
|
|
|   |   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|
|
|   | . | . | . |
|   |   |   |
Template Sequence |   |
S | L | H | D | K | T | V | L | V | V | G | A | G | E | M | G | K | T | V | A | K | S | L | V | D | R | G | V | R | A | V | L | V | A | N | R | T | Y | E | R | A | V | E | L | A | R | D | L | G | G | E | A | V | R | F | D | E | L | V | D | H | L | A | R | S | D | V | V | V | S | A | T | A | . |
. |
. |
A | P | H | P |
Template Known Secondary structure |   |
|
| T | T |
|  |  |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |
|
| G | G | G |  |  |  |  |  |  | T |
| S |  |  |  |  |
|
| S | . | . | . | S | S | S |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
| . | . | . |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | |
|
|
. | . | . | 240 |
  |
  |   |
207 | . | . | 210 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | I | N | Q | Q | L | L | E | K | L | . |
. |
. |
. |
. |
. |
P | D | G | A | Y | L | L | N | L | A | R | G | V | H | V | V |
Query Conservation |   |
|
|   |   |   |   |
|   |   |
| . | . | . | . | . | . |
|   |
|
|   |
|
|
|
|   |
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
Template Sequence |   |
V | I | H | V | D | D | V | R | E | A | L | R | K | R | D | R | R | S | P | I | L | I | I | D | I | A | N | P | R | D | V | E |
Template Known Secondary structure |   |
| B |
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |
|
| S | S |
| S | B |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
241 | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|