Job Description P39376 Confidence 37.74% Date Thu Jan 5 12:00:08 GMT 2012 Rank 340 Aligned Residues 172 % Identity 18% Template c3r39A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica Resolution 2.14 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		L	F	T	W	A	I	E	A	I	D	V	D	E	A	V	D	K	L	R	E	G	Q	S	D	C	I	F	.	S	F	H	D	E	D	L	L	E	A	P	F	D	H	I	R	L	F	E	S	Q	L	F	P	V	C	A	S	D	E	H	G	E	A	L	F	N	L	A	Q	P	H	F	P	L	L	N	Y	S	R	N	S
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F	S	G	I	S	I	T	D	K	R	K	K	V	I	D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K	Y	S	I	G	Y	P	R	G	M
Template Known Secondary structure		T																				T	S		S														T	T							S											T	T	S					S	S	G	G	G	G	G	G	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		Y	M	G	R	L	I	N	R	T	L	T	R	H	S	E	L	S	F	S	T	F	F	V	S	S	M	S	E	L	L	K	Q	V	A	L	D	G	C	G	.	I	A	W	L	P	E	Y	A	I	Q	Q	E	I	R	S	G	K	L	V	V	L	N	R	D	E	L	V	I	P	I	Q	A	Y	A	Y	R	M	N	T	R
Query Conservation																																									.
Alig confidence																																									.																																								.
Template Conservation																																																																																	.
Template Sequence		A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G	N	L	D	L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	P	I	E	S	R	Y	V	F	K	N	V	D	Q	L	G	I	A	F	K	K	G	.
Template Known Secondary structure		T									T	G	G	G	T	S			G	G	G					S	S										T	T	S		S															T	S																						T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	P	V	A	E	R	F	W	R	E	L	R	E	L	E
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	S	P	V	R	D	D	F	N	L	W	L	K	E	Q	G
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			206	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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