Job Description P39376 Confidence 99.39% Date Thu Jan 5 12:00:08 GMT 2012 Rank 34 Aligned Residues 193 % Identity 20% Template c3hhfB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis. Resolution 2.30 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	K	I	K	I	A	A	A	H	S	L	S	L	G	L	L	P	S	I	I	S	Q	M	P	P	L	F	T	W	A	I	E	A	I	D	V	D	E	A	V	D	K	L	R	E	G	Q	S	D	C	I	F	S	F	H	D	E	D	L	L	E	A	P	F	D	H	I	R	L	F	E	S	Q	L	F	P	V	C	A
Query Conservation
Alig confidence																																																												.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		Q	G	V	L	S	V	D	S	A	X	P	X	V	L	H	L	L	A	P	L	A	A	K	F	N	E	R	Y	P	H	I	R	L	S	L	V	S	S	E	G	Y	I	N	L	I	E	R	K	V	D	I	A	L	R	A	G	D	D	.	.	.	.	S	G	L	R	A	R	H	L	F	D	S	R	F	R	V	I	A	S
Template Known Secondary structure																	T													T	T									S	T	T					T	T	S	S	S									.	.	.	.	S	S
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		S	D	E	H	.	.	.	G	E	A	L	F	N	L	A	Q	P	H	F	P	L	L	N	Y	S	R	N	S	Y	M	G	R	L	I	N	R	T	L	T	R	H	S	E	L	S	F	S	T	F	F	V	S	S	M	S	E	L	L	K	Q	V	A	L	D	G	C	G	I	A	W	L	P	E	Y	A	I	Q	Q	E	I
Query Conservation						.	.	.
Alig confidence						.	.	.																																				.
Template Conservation																																												.
Template Sequence		P	E	Y	L	A	K	H	G	T	P	Q	S	T	E	E	L	A	G	H	Q	C	L	G	F	T	E	P	G	S	L	N	T	W	A	V	L	D	A	Q	G	N	P	.	Y	K	I	S	P	H	F	T	A	S	S	G	E	I	L	R	S	L	C	L	S	G	C	G	I	V	C	L	S	D	F	L	V	D	N	D	I
Template Known Secondary structure												S	S	G	G	G	G	G	G	S		B				S	S		G	G	G	G							T	T	S			.						S	S			S	S										T	T	S		B
Template Predicted Secondary structure																																												.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure										.																.
Query SS confidence										.																.
Query Sequence		R	S	G	K	L	V	V	L	.	N	R	D	E	L	V	I	P	I	Q	A	Y	A	Y	R	.	M	N	T	R	M	N	P	V	A	E	R	F	W	R	E	L	R	E
Query Conservation										.																.
Alig confidence										.																.
Template Conservation
Template Sequence		A	E	G	K	L	I	P	L	L	A	E	Q	T	S	D	K	T	H	P	F	N	A	V	Y	Y	S	D	K	A	V	N	L	R	L	R	V	F	L	D	F	L	V	E
Template Known Secondary structure				T	S	S					T	T	T	B													G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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