Job Description P39376 Confidence 99.53% Date Thu Jan 5 12:00:08 GMT 2012 Rank 24 Aligned Residues 191 % Identity 16% Template c3fd3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein; PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58. Resolution 1.70 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		Q	R	K	I	K	I	A	A	A	H	S	L	S	L	G	L	L	P	S	I	I	S	Q	M	.	.	.	P	P	L	F	T	W	A	I	E	A	I	D	V	D	E	A	V	D	K	L	R	E	G	Q	S	D	C	I	F	S	F	H	D	E	D	L	L	E	A	P	F	D	H	I	R	L	F	E	S	Q	L	F	P
Query Conservation																										.	.	.
Alig confidence																										.	.	.			.																																.	.
Template Conservation																															.																																.	.
Template Sequence		R	V	T	L	N	I	A	T	N	A	D	S	L	G	T	W	F	L	D	A	V	S	K	F	T	G	G	S	D	.	Y	L	V	N	I	A	V	D	D	Q	D	H	T	V	E	W	L	R	G	G	R	V	L	A	A	V	T	A	H	D	K	.	.	P	V	Q	G	C	R	V	T	P	L	G	V	L	R	Y	H	A
Template Known Secondary structure															T	T	T											T	S	S	.										S	S								T	T	S		S					S			S	.	.			T	T
Template Predicted Secondary structure																															.																																.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		V	C	A	S	D	E	H	G	.	.	.	.	E	A	L	F	N	L	A	Q	P	H	F	P	L	L	N	Y	S	R	N	S	Y	M	G	R	L	I	N	R	T	L	T	R	H	S	E	L	S	F	S	T	F	F	V	S	S	M	S	E	L	L	K	Q	V	A	L	D	G	C	G	I	A	W	L	P	E	Y	A	I
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.																														.	.
Template Conservation																																											.	.
Template Sequence		T	A	S	P	D	F	X	A	R	H	F	A	D	G	V	T	P	A	A	L	A	R	A	P	G	L	T	F	N	Q	K	D	R	L	Q	A	S	W	I	R	T	.	.	A	L	G	E	D	V	S	Y	P	T	H	W	L	P	S	T	D	G	F	V	K	A	S	L	A	G	X	G	W	G	L	N	P	V	Q	L	V
Template Known Secondary structure													T	T		S						T	T	S					S	S	T	T											.	.			S	S																					T	T	S		B
Template Predicted Secondary structure																																											.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	E	I	R	S	G	K	L	V	V	L	N	R	D	E	L	V	I	P	I	Q	A	Y	A	Y	R	M	N	T	R	M	N	P	V	A	E	R	F	W	R	E	L	R	E
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		A	E	H	L	A	A	G	R	L	V	E	L	X	P	G	T	P	L	.	.	D	I	P	L	Y	W	Q	V	N	R	L	A	A	E	R	L	A	G	L	T	A	N	X	V	G
Template Known Secondary structure								T	S	S			S	S	T	T				.	.										T	T	T	T	T	T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions