Job Description P39376 Confidence 99.07% Date Thu Jan 5 12:00:08 GMT 2012 Rank 37 Aligned Residues 181 % Identity 14% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	I	A	A	A	H	S	L	S	L	G	L	L	P	S	I	I	S	Q	M	P	P	L	F	T	W	A	I	E	A	I	D	V	D	E	A	V	D	K	L	R	E	G	Q	S	D	C	I	F	S	F	H	D	E	D	L	L	E	A	P	F	D	H	I	R	L	F	E	S	Q	L	F	P	V	C	A	S	D
Query Conservation
Alig confidence																																							.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		L	L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	.	.	.	.	.	.	G	A	V	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	S	Q	L	L	C	E	E	T	L	L	L	I	G	N	T	N
Template Known Secondary structure															T													T	T										.	.	.	.	.	.	S						S								S		S			T	T															T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	G	E	A	L	F	N	L	A	Q	P	H	F	P	L	L	N	Y	S	R	N	S	Y	M	G	R	L	I	N	R	T	L	T	R	H	S	E	L	S	F	S	T	F	F	V	S	S	M	S	E	L	L	K	Q	V	A	L	D	G	C	G	I	A	W	L	P	E	Y	A	I	Q	Q	E	I	R	S	G	K	L
Query Conservation
Alig confidence				.	.	.	.																															.	.	.	.	.
Template Conservation				.	.	.	.																															.	.	.	.	.
Template Sequence		L	P	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	P	Q	T	T	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	.	.	.	.	.	Y	H	S	V	G	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X	A	Q	F	S	I	L	R	G	D	I
Template Known Secondary structure		S		.	.	.	.				G	G	G	G	S		B			B	T	T		T														.	.	.	.	.	B		S			B	S	S										T	T			B														T	T	S
Template Predicted Secondary structure				.	.	.	.																															.	.	.	.	.
Template SS confidence
		95	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		V	V	L	N	R	D	E	L	V	I	P	I	Q	A	Y	A	Y	R	.	M	N	T	R	M	N	P	V	A	E	R	F	W	R	E	L	R	E
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		Q	H	I	G	N	L	K	L	H	S	G	Y	G	Y	Y	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D
Template Known Secondary structure																					G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions