Job Description P12758 Confidence 100.00% Date Thu Jan 5 11:33:11 GMT 2012 Rank 2 Aligned Residues 247 % Identity 26% Template c3bjeA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nucleoside phosphorylase, putative; PDBTitle: crystal structure of trypanosoma brucei nucleoside phosphorylase shows2 uridine phosphorylase activity Resolution 1.44 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		S	K	S	D	V	F	H	L	G	L	T	K	N	D	L	Q	G	A	T	L	A	I	V	P	G	D	P	D	R	V	E	K	I	A	A	L	M	D	.	.	K	P	V	K	L	A	S	H	R	E	F	T	T	W	R	A	E	L	D	G	K	P	V	I	V	C	S	T	G	I	G	G	P	S	T	S	I	A	V	E
Query Conservation																																								.	.
Alig confidence																	.	.																						.	.
Template Conservation																	.	.
Template Sequence		K	D	G	T	T	L	H	L	K	C	K	S	D	E	L	.	.	A	D	R	I	I	F	V	G	D	P	G	R	V	D	V	I	S	G	Y	F	D	K	D	S	I	R	A	S	R	D	H	R	E	I	R	F	A	T	G	T	Y	K	G	T	P	V	T	V	I	S	T	G	M	G	V	D	N	I	E	I	V	L	N
Template Known Secondary structure		T	T	S			S	S	S				G	G	G		.	.		S						S	S	T	T							T	T	S		T	T									T	T									T	T										S	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		80	.	.	.	.																													.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query Sequence		E	L	A	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	R	T	F	L	R	I	G	T	T	G	A	I	Q	P	H	I	N	V	G	D	V	L	V	T	T	A	S	V	R	L	D	G	A	S	L	H	F	A	P	L	E	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Template Conservation
Template Sequence		E	I	H	A	L	K	E	Y	D	M	E	R	G	Q	W	R	H	R	K	G	D	A	D	A	P	S	A	G	P	F	F	D	P	S	T	M	K	I	I	R	L	G	T	C	G	S	P	A	E	S	V	P	P	L	A	L	A	V	T	R	H	A	I	G	M	D	N	T	S	L	Y	Y	S	A	G	T	R	E	T	S
Template Known Secondary structure											T	T	T	T				B		T	T		T	T	S		T	T			B			G	G	G														T	T	S		T	T												S		G	G	G	G	G	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
																							128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.										.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	A	V	A	D	F	E	C	T	T	A	L	V	E	A	A	K	S	I	.	.	.	.	.	.	.	.	.	G	A	T	T	H	V	G	V	T	A	S	S	D	T	F	Y	P	G	Q	E	R	Y	D	T	Y	S	G	R	V	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	Q	Q	E	I	R	R	I	V	R	E	Q	T	G	L	R	A	I	D	I	Y	T	S	M	A	H	P	N	I	T	K	S	I	C	A	A	C	D	A	H	N	A	A	T	G	S	E	A	D	K	Q	Q	Y	V	I	G	T	T	A	T	A	S	G	F	Y	G	C	Q	G	R	R	V	G	R	F	M	K	H	L
Template Known Secondary structure															S	G	G	G	G	S																									T				G	G	G													S	S	S	S	G	G	G	T				G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																																										.
Query SS confidence													.	.	.	.	.	.	.	.																																										.
Query Sequence		R	H	F	K	G	S	M	E	E	W	Q	.	.	.	.	.	.	.	.	A	M	G	V	M	N	Y	E	M	E	S	A	T	L	L	T	M	C	A	S	Q	G	L	R	A	G	M	V	A	G	V	I	V	N	R	T	Q	Q	E	I	P	.	N	A	E	T	M	K	Q	T	E	S	H	A	V	K	I	V	V	E	A
Query Conservation													.	.	.	.	.	.	.	.																																										.
Alig confidence													.	.	.	.	.	.	.	.																																										.
Template Conservation
Template Sequence		T	V	P	N	M	V	E	E	L	G	S	L	K	F	N	L	S	N	G	V	E	V	V	T	N	I	E	M	E	T	S	A	I	C	Y	L	S	D	M	L	G	Y	Q	A	G	A	A	C	V	V	V	S	K	R	V	G	E	K	K	M	F	L	G	D	Q	L	D	A	A	M	K	R	C	I	K	I	I	L	E	A
Template Known Secondary structure		S	S	T	T													T	T										S	S												T													S	S	T	T						T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		249	250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		338	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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