Job Description P12758 Confidence 99.97% Date Thu Jan 5 11:33:11 GMT 2012 Rank 27 Aligned Residues 228 % Identity 13% Template c1wtaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:5'-methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum2 pernix (r32 form) Resolution 1.78 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70							.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.																	.					.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.																	.					.	.	.	.	.	.
Query Sequence		H	L	G	L	T	K	N	D	L	Q	G	A	T	L	A	I	V	P	G	D	P	D	R	V	E	K	I	A	A	L	M	D	K	P	V	K	L	A	S	H	R	E	F	.	.	.	.	.	T	T	W	R	A	E	L	D	G	K	P	V	I	V	C	S	.	T	G	I	G	.	.	.	.	.	.	G	P	S	T	S
Query Conservation																																													.	.	.	.	.																	.					.	.	.	.	.	.
Alig confidence										.	.													.	.	.																			.	.	.	.	.																	.					.	.	.	.	.	.
Template Conservation										.	.													.	.	.
Template Sequence		E	I	T	R	P	P	G	V	.	.	R	A	H	V	G	V	I	G	G	S	G	L	.	.	.	Y	D	P	G	I	V	E	N	P	V	E	V	K	V	S	T	P	Y	G	N	P	S	D	F	I	V	V	G	D	V	A	G	V	K	V	A	F	L	P	R	H	G	R	G	H	R	I	P	P	H	A	I	N	Y	R
Template Known Secondary structure						S	T	T		.	.			S							G	G	G	.	.	.			T	T	T												T	T				S	S								T	T								T	T	T	T	T	T		S		G	G	G
Template Predicted Secondary structure										.	.													.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.
Query Sequence		I	A	V	E	E	L	A	Q	L	G	I	R	T	F	L	R	I	G	T	T	G	A	I	Q	P	H	I	N	V	G	D	V	L	V	T	T	A	S	V	R	L	D	G	A	S	L	H	F	A	P	L	E	F	P	A	V	A	.	.	.	.	.	.	.	.	D	F	E	C	T	T	A	L	V	E	A	A	K	S	I
Query Conservation																																																											.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	I	W	A	L	K	A	L	G	V	K	W	V	I	S	V	S	A	V	G	S	L	R	E	D	Y	R	P	G	D	F	V	V	P	D	Q	F	I	D	M	T	K	N	R	R	H	Y	T	F	Y	D	G	P	V	T	V	H	V	S	M	A	D	P	F	C	E	D	L	R	Q	R	L	I	D	S	G	R	R	L
Template Known Secondary structure											T													S	S	T	T	S		T	T																S		S		S			S	S	S		B					S	S		S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.
Predicted Secondary structure																																												.																																			.
Query SS confidence																																												.																																			.
Query Sequence		G	A	T	T	H	V	G	V	T	A	S	S	D	T	F	Y	P	G	Q	E	R	Y	D	T	Y	S	G	R	V	V	R	H	F	K	G	S	M	E	E	W	Q	A	.	M	G	V	M	N	Y	E	M	E	S	A	T	L	L	T	M	C	A	S	Q	G	L	R	A	G	M	V	A	G	V	I	V	N	R	.	T	Q
Query Conservation																																												.																																			.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																									.																																			.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	T	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	G	T	Y	V	C	I	E	G	P	R	F	S	T	R	A	E	S	R	V	W	K	D	V	F	K	A	D	I	I	G	M	T	L	V	P	E	I	N	L	A	C	E	A	Q	L	C	Y	A	T	L	A	M	V	T	D	Y	D	V	W	A
Template Known Secondary structure		T					.	.	.	.	.	.	.	.	.	.	.	.	.	S										S	S													T	S			S				S	S											T	T													T	T	S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.														.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	I	P	N	A	E	T	M	K	Q	T	E	S	H	A	V	K	I	V	V	E	A	A	R	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	P	V	T	A	E	E	V	E	R	V	M	I	S	N	V	E	R	A	R	R	M	L	Y	D	V	I
Template Known Secondary structure		S	S																										G
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions