Job Description P28903 Confidence 20.53% Date Thu Jan 5 11:45:16 GMT 2012 Rank 206 Aligned Residues 78 % Identity 5% Template c3it9B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacc; PDBTitle: crystal structure of penicillin-binding protein 6 (pbp6)2 from e. coli in apo state Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520								.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.				.	.	550	.	.	.	.	.	.	.	.				.	560
Predicted Secondary structure																													.	.	.	.	.	.	.																												.	.	.												.	.	.
Query SS confidence																													.	.	.	.	.	.	.																												.	.	.												.	.	.
Query Sequence		I	H	E	T	I	N	A	L	F	G	G	E	H	V	Y	D	N	E	Q	L	R	A	K	G	I	A	I	.	.	.	.	.	.	.	V	E	R	L	R	Q	A	V	D	Q	W	K	E	E	T	G	Y	G	F	S	L	Y	S	T	P	S	E	.	.	.	N	L	C	D	R	F	C	R	L	D	T	.	.	.	A	E
Query Conservation																													.	.	.	.	.	.	.																												.	.	.												.	.	.
Alig confidence														.	.	.													.	.	.	.	.	.	.																												.	.	.												.	.	.
Template Conservation														.	.	.
Template Sequence		V	A	D	L	N	K	G	V	I	I	Q	S	.	.	.	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	G	L	D	A	P	G	Q	F	S	T	A	R	D	M	A	L	L	G	K	A	L	I	H	D
Template Known Secondary structure												T		.	.	.														S	S															T	T		T	T		B			S	S	S					T	T		B	B
Template Predicted Secondary structure														.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	V	P	G	V	T	D	K	G	Y	Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	E	E	Y	A	I	H	K	E	K	E	F	T
Template Known Secondary structure								G	G	G
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions