Job Description P28903 Confidence 38.08% Date Thu Jan 5 11:45:16 GMT 2012 Rank 105 Aligned Residues 42 % Identity 19% Template c3h7hA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) Resolution 1.55 Å

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		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.				660	.	.	.	.	.	.	.	.	.	670	.	.											.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure																		.	.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		C	Y	E	C	G	F	T	G	E	F	E	C	T	S	K	G	.	.	.	F	T	C	P	K	C	G	N	H	D	A	S	R	.	.	.	.	.	.	.	.	.	.	V	S	V	T	R	R	V	C	G	Y	L	G	S	P	D	A	R	P	F
Query Conservation																		.	.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.						.	.	.														.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation									.	.	.	.																																																.	.
Template Sequence		C	L	L	C	S	L	V	.	.	.	.	K	T	I	D	Q	F	E	Y	D	G	C	D	N	C	D	A	Y	L	Q	M	K	G	N	R	E	M	V	Y	D	C	T	S	S	S	F	D	G	I	I	A	M	M	S	P	E	D	S	.	.	W
Template Known Secondary structure			T	T	T		B		.	.	.	.												T	T	T							T	T											S									S		G	G	G		.	.
Template Predicted Secondary structure									.	.	.	.																																																.	.
Template SS confidence
		16	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions