 |
Job Description | P28903 | Confidence | 36.84% | Date | Thu Jan 5 11:45:16 GMT 2012 |
Rank | 110 | Aligned Residues | 38 |
% Identity | 21% | Template | c3h0gL_ |
PDB info |
PDB header:transcription | Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii |
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
|
Resolution | 3.65 Å |
|
  |   |
643 | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | C | Y | E | C | G | F | T | G | E | F | E | C | T | S | K | G | F | T | C | P | K | C | G | N | H | D | A | S | R | V | S | V | T | R | R | V | C | G | Y |
Query Conservation |   |
  |
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |   |   |   |   |
| . |
|   |   |
|   |
|
|
|
|
|
|
|   |
|
|
|
|
|
| . |
|
|   |
|   |
|
|
|
Template Sequence |   |
L | C | A | D | C | G | A | R | N | T | I | . |
Q | A | K | E | V | I | R | C | R | E | C | G | H | R | V | M | Y | K | M | . |
R | T | K | R | M | V | Q | F |
Template Known Secondary structure |   |
B |
| S | S | S |
|
| B |
|
|
| . |
| S | S | S |
|
|
|
| S | S | S |
|
|
|
|
| B |
|
| . |
|
|
|
|
|
|
|
|
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  | . |
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | |
. | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
. | . | . | . | . | . | . | 60 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|