Return to main results Retrieve Phyre Job Id

Job DescriptionP28903
Confidence27.24%DateThu Jan 5 11:45:16 GMT 2012
Rank162Aligned Residues27
% Identity19%Templatec1i3qI_
PDB info PDB header:transcriptionChain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   640.........650......... 660......
Predicted Secondary structure 

















....






Query SS confidence 



















. . . .






Query Sequence  PIDECYECGFTGEFECTSKG. . . . FTCPKCG
Query Conservation    
 
  

  
     
  ....  

 

Alig confidence 



















....






Template Conservation   
 


 




              
  
 
Template Sequence  TFRFCRDCNNMLYPREDKENNRLLFECRTCS
Template Known Secondary structure 


B
SSS

BTTTTSSS
Template Predicted Secondary structure 



















Template SS confidence 






























   3......10.........20.........30...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions