Job Description P77161 Confidence 97.08% Date Thu Jan 5 12:25:47 GMT 2012 Rank 453 Aligned Residues 144 % Identity 13% Template c1vi2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	G	F	I	G	L	G	I	M	G	T	P	M	A	I	N	L	A	R	A	G	H	.	Q	L	H	V	T	T	I	G	P	V	A	D	E	L	L	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	V	S	V	E	T	A	R	Q	V	T	E	A	S	D	I	I	F	I	M	V	P
Query Conservation																									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	X	V	L	L	G	A	G	G	A	S	T	A	I	G	A	Q	G	A	I	E	G	L	K	E	I	K	L	F	N	R	R	D	E	F	F	D	K	A	L	A	F	A	Q	R	V	N	E	N	T	D	C	V	V	T	V	T	D	L	A	D	Q	Q	A	F	A	E	A	L	A	S	A	D	I	L	T	N	G	T	K
Template Known Secondary structure									S													T	T										S	S																	S	S								T	T											S		S						S	S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	Q	V	E	E	V	L	F	G	E	N	G	C	T	K	A	S	L	K	G	K	T	I	V	D	M	S	S	I	S	P	I	E	T	K	R	F	A	R	Q	V	N	E	L	G	G	D	Y	L	D	A	P	V	S	G	G	E	I	G	A	R	E	G	T	L	S	I	M	V	G	G	D	E	A	V	F	E	R
Query Conservation
Alig confidence																		.																				.	.
Template Conservation																		.																				.	.
Template Sequence		V	G	X	K	P	L	E	N	E	S	L	V	N	D	I	S	.	L	L	H	P	G	L	L	V	T	E	C	V	Y	N	P	H	X	T	K	.	.	L	L	Q	Q	A	Q	Q	A	G	C	K	T	I	D	G	Y	G	X	L	L	W	Q	G	A	E	Q	F	T	L	W	T	G	K	D	F	P	L	E	Y	V	K	Q
Template Known Secondary structure		T	T	S	T	T		T	T			S		S		G	G	.	G			T	T									S	S	S	S			.	.									T																							S	S
Template Predicted Secondary structure																		.																				.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		145	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	X	G	F
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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