Job Description P77161 Confidence 100.00% Date Thu Jan 5 12:25:47 GMT 2012 Rank 29 Aligned Residues 256 % Identity 14% Template c1dliA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the2 catalytic residues necessary for the two-fold oxidation Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	L	G	F	I	G	L	G	I	M	G	T	P	M	A	I	N	L	A	R	A	G	H	Q	L	H	V	T	T	I	G	P	V	A	D	E	L	L	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	V	S	V	E	T	A	R	Q	V	T	E	A	S	D	I	I	F	I
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		M	K	I	A	V	A	G	S	G	Y	V	G	L	S	L	G	V	L	L	S	.	L	Q	N	E	V	T	I	V	D	I	L	P	S	K	V	D	K	I	N	N	G	L	S	P	I	Q	D	E	Y	I	E	Y	Y	L	K	S	K	Q	L	S	I	K	A	T	L	D	S	K	A	A	Y	K	E	A	E	L	V	I	I
Template Known Secondary structure										S											T	.	T	T	S							S										T	T			S	S												S								S										S
Template Predicted Secondary structure																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70							.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.
Query Sequence		M	V	P	D	T	P	Q	V	E	.	.	.	.	.	.	E	V	L	F	G	E	N	G	C	T	K	A	S	L	K	G	K	T	I	V	D	M	S	S	I	S	P	I	E	T	K	R	F	A	R	Q	V	N	E	L	G	G	D	Y	L	D	A	P	V	S	G	G	E	I	G	A	R	E	G	T	L	S	I	M	V
Query Conservation											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	P	T	N	Y	N	S	R	I	N	Y	F	D	T	Q	H	V	E	T	V	I	K	E	V	L	S	V	N	S	H	A	T	L	I	I	K	S	T	I	P	I	G	F	I	T	E	M	R	Q	K	F	Q	T	D	R	I	I	F	S	P	E	F	L	R	E	S	K	A	L	Y	D	N	L	Y	P	S	R	I	I
Template Known Secondary structure									T	T	T	T																			S	S							S				T	T										T		S											T	T	S	T	T					S		S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		136	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.											.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure				.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	.	D	E	A	V	F	E	R	V	K	P	L	F	E	L	L	G	.	.	.	.	.	.	.	.	.	.	K	N	I	T	L	V	G	G	N	G	D	G	Q	T	C	K	V	A	N	Q	I	I	V	A	L	N	I	E	A	V	S	E	A	L	L	F	A	S	K	A	G	A	D	P	V	R	V	R	Q	A	L
Query Conservation				.																	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	C	E	E	N	D	S	P	K	V	K	A	D	A	E	K	F	A	L	L	L	K	S	A	A	K	K	N	N	V	P	V	L	I	M	G	A	S	E	A	E	A	V	K	L	F	A	N	T	Y	L	A	L	R	V	A	Y	F	N	E	L	D	T	Y	A	E	S	R	K	L	N	S	H	M	I	I	Q	G	I
Template Known Secondary structure						T	T	S																				S	S	S																																								T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	G	F	A	S	S	R	I	L	E	V	H	G	E	R	M	I	K	R	T	F	N	P	G	F	K	I	A	L	H	Q	K	D	L	N	L	A	L	Q	S	A	K	A	L	A	L	N	L	P	N	T	A	T	C	Q	E	L	F	N	T	C	A	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.																			.	.
Template Conservation													.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		S	Y	D	D	R	I	G	M	H	Y	N	.	.	.	.	.	.	.	.	.	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	.	.	L	A	N	Y	N	N	I	P	Q	T	L	I	E	A	I	V	S	S	N	N	V	R	K	S
Template Known Secondary structure			T	S	T	T	T		S	S	S		.	.	.	.	.	.	.	.	.				S				S	S										.	.				T	T	T	S	S		S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250										.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions