Job Description P76397 Confidence 100.00% Date Thu Jan 5 12:22:38 GMT 2012 Rank 1 Aligned Residues 291 % Identity 19% Template c3h9iB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli Resolution 3.40 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																										.	.																				.
Query SS confidence																										.	.																				.
Query Sequence		A	P	V	Q	A	A	T	A	V	E	Q	A	V	P	R	Y	L	T	G	L	G	T	I	T	.	.	A	A	N	T	V	T	V	R	S	R	V	D	G	Q	L	I	A	L	H	.	F	Q	E	G	Q	Q	V	K	A	G	D	L	L	A	E	I	D	P	S	Q	F	K	V	A	L	A	Q	A	Q	G	Q	L	A	K
Query Conservation																										.	.																				.
Alig confidence																										.	.																				.																				.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		L	G	V	K	T	A	T	V	T	R	G	P	L	T	F	A	Q	S	F	P	A	N	V	S	Y	N	E	Y	Q	Y	A	I	V	Q	A	R	A	A	G	F	I	D	K	V	Y	P	L	T	V	G	D	K	V	Q	K	G	T	P	L	L	D	L	T	I	P	.	.	.	.	D	W	V	E	A	Q	S	E	Y	L	L
Template Known Secondary structure										B																B		T	T									S									S			S	S					T	T										.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	A	T	L	A	N	A	R	R	D	L	A	R	Y	Q	Q	L	A	K	T	N	L	V	S	R	Q	E	L	D	A	Q	Q	A	L	V	S	E	T	E	G	T	I	K	A	D	E	A	S	V	A	S	A	Q	L	Q	L	D	W	S	R	I	T	A	P	V	D	G	R	V	G	L	K	Q	V	D	V	G	N	Q
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	E	T	G	G	T	A	T	Q	T	E	G	I	L	E	R	L	R	L	A	G	M	P	E	A	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	L	I	A	T	Q	K	I	Q	T	R	F	T	L	K	A	P	I	D	G	V	I	T	A	F	D	L	R	A	G	M	N
Template Known Secondary structure					S																		T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		S	S					S						S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	G	D	T	T	G	I	V	V	I	T	Q	T	H	P	I	D	L	V	F	T	L	P	E	S	D	I	A	T	V	V	Q	A	Q	K	A	G	K	P	L	V	V	E	A	W	D	R	T	N	S	K	K	L	S	E	G	T	L	L	S	L	D	N	Q	I	D	A	T	T	G	T	I	K	V	K	A	R	F
Query Conservation
Alig confidence								.	.																																	.	.	.	.	.	.
Template Conservation								.	.																																	.	.	.	.	.	.
Template Sequence		I	A	K	D	N	V	.	.	V	A	K	I	Q	G	M	D	P	V	W	V	T	A	A	I	P	E	S	I	A	W	L	V	K	D	A	S	Q	F	T	L	.	.	.	.	.	.	T	V	P	A	R	P	D	K	T	L	T	I	R	K	W	T	L	L	P	G	V	D	A	A	T	R	T	L	Q	L	R	L	E	V
Template Known Secondary structure				S				.	.								S																			G	G	G				.	.	.	.	.	.			S	S				S															T	T	T	T
Template Predicted Secondary structure								.	.																																	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	Q	D	D	A	L	F	P	N	Q	F	V	N	A	R	M	L	V	D	T	E	Q	N	A	V	V	I	P	T	A	A	L	Q	M	G	N	E	G	H	F	V	W	V	L	N	S	E	N	K	V	S	K	H	L	V	T	P	G	I	Q	D	S	Q	K	V	V	I	R	A	G	I	S	A	G	D	R	V	V	T
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		D	N	A	D	E	A	L	K	P	G	M	N	A	W	L	Q	L	N	T	A	S	E	.	P	M	L	L	I	P	S	Q	A	L	I	D	T	G	S	E	Q	R	V	I	T	V	D	A	D	G	R	F	V	P	K	R	V	A	V	F	Q	A	S	Q	G	V	T	A	L	R	S	G	L	A	E	G	E	K	V	V	S
Template Known Secondary structure					S	S				T	T												S	.							G	G	G		B		S	S	S									S	S	S														T	T							S			T	T					S
Template Predicted Secondary structure																								.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		377	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	I	D	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	L	F	L	I
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions