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Job DescriptionP76397
Confidence99.91%DateThu Jan 5 12:22:38 GMT 2012
Rank3Aligned Residues250
% Identity24%Templatec3fppB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca
Resolution2.99 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.........120.........130... ......140
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Query Sequence  VEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQ. . . . . . . LAKDKAT
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Template Sequence  RPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAE
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   42.......50.........60.........70.........80.........90.........100.........110.........120.
 
   141........150.........160.........170.........180.... .....190.........200.........210...
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Query Sequence  LANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEA. . . . . . . SVASAQLQLDWSRITAPVDGRVGLKQVDV
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Template Sequence  LKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQ
Template Known Secondary structure  S

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   122.......130.........140.........150.........160.........170.........180.........190.........200.
 
   214.....220... ......230.........240.........250.........260.........270.........280.........290
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Query Sequence  GNQISSGDTT. GIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTI. .
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Template Sequence  GQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWF. . . . . . TVLGDQLTRYEGQIKDVLPTPEKVNDAIFY
Template Known Secondary structure  S


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   202.......210.........220.........230.........240..... ....250.........260.........270.....
 
   291........300.........310.........320...
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Query Sequence  KVKARFNNQDDALFPNQFVNARMLVDTEQNAVV
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Template Sequence  YARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLT
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   276...280.........290.........300........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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