Job Description P39328 Confidence 1.59% Date Thu Jan 5 11:59:22 GMT 2012 Rank 55 Aligned Residues 225 % Identity 15% Template c3nd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Resolution 3.20 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.													.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	I	V	L	L	S	A	L	G	T	G	I	L	A	G	L	W	N	G	I	L	V	A	I	L	K	I	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	F	V	A	T	L	I	L	M	V	A	G	R	G	V	A	Q	L	I	T	A	G	Q	I	V	T	F	N	S	P	D	L	S	W	F	G	S	G	S
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	V	G	L	I	T	G	V	L	G	A	G	F	K	S	A	V	N	N	M	L	Q	W	R	S	Q	L	A	Q	I	L	A	P	I	P	P	L	A	W	L	V	T	A	L	I	S	G	G	M	V	A	L	S	F	W	L	M	K	R	F	A	P	D	T	S	G	S	G	I	P	Q	I	E	G	H	L	E	G	K
Template Known Secondary structure																																	S	T	T	S		T																						T	T	T		G	G	G	S	B		S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		L	L	F	L	P	T	P	V	I	I	A	V	L	T	L	I	L	F	W	L	L	T	R	K	T	A	L	G	M	F	I	E	A	V	G	I	N	I	R	A	A	K	N	A	G	V	.	.	N	T	R	I	I	V	M	L	T	Y	V	L	S	G	L	C	A	A	I	A	G	I	I	V	A	A	D	I	R	G	A	D
Query Conservation																																																.	.
Alig confidence																									.																							.	.
Template Conservation																									.
Template Sequence		L	P	L	V	W	Q	R	V	L	P	I	K	L	V	G	G	F	L	S	L	G	A	G	.	M	L	A	G	F	E	G	P	T	I	Q	M	G	G	S	I	G	Q	M	T	G	G	W	F	K	A	T	Q	E	N	Q	R	I	L	I	A	V	G	A	G	A	G	L	A	T	A	F	N	A	P	L	A	G	V	A	L
Template Known Secondary structure		S																					T	T	.		S			T																			T	T																							T
Template Predicted Secondary structure																									.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		253		.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.											.	.
Query SS confidence			.											.	.
Query Sequence		A	.	N	N	A	G	L	W	L	E	L	D	.	.	A	I	L	A	V	V	I	G	G	G	S	L	M	G	G	R	F	N	L	L	L	S	V	V	G	A	L	I	I	Q	G	M	N	T	G	I	L	L	S	G	F	P	P	E	M	N	Q	V	V	K	A	V	V	V	L	C	V	L	I	V	Q	S	Q	R	F	I
Query Conservation			.											.	.
Alig confidence			.											.	.									.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.
Template Sequence		I	G	E	E	M	H	P	R	F	R	S	Q	T	L	A	Y	H	S	L	L	F	G	.	.	.	.	.	.	.	.	.	C	V	M	A	T	I	I	L	R	M	I	R	G	Q	S	A	I	I	S	L	T	E	F	K	R	V	P	L	D	S	L	W	M	F	I	I	L	G	I	L	F	G	V	M	G	Y	T	F	N
Template Known Secondary structure				S	S	S					S	S			T	T								.	.	.	.	.	.	.	.	.												T		S	S		S	S			T	T						G	G	G
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	I	K	G	V	R	S	R	D	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	L	F	K	V	L	D	W	F	D	R
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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