Job Description P39328 Confidence 96.79% Date Thu Jan 5 11:59:22 GMT 2012 Rank 2 Aligned Residues 294 % Identity 17% Template c2nq2A_ PDB info PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. Resolution 2.40 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40											.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.
Query Sequence		W	P	T	G	M	P	Q	L	V	A	L	L	L	V	L	L	V	D	S	L	V	A	P	.	.	.	.	.	.	.	.	.	.	H	F	W	Q	V	V	L	Q	D	G	R	L	F	G	S	P	I	D	I	L	N	R	A	A	P	V	A	L	L	A	I	G	M	T	L	V	I	A	T	G	G	I	D	L	S	V	G
Query Conservation																									.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																																							.
Template Sequence		Y	P	K	I	L	F	G	L	T	L	L	L	V	I	T	A	V	I	S	L	G	I	G	R	Y	S	L	S	V	P	Q	I	D	P	V	Q	Q	Q	V	I	F	Q	V	R	L	P	R	I	L	T	A	L	C	.	V	G	A	G	L	A	L	S	G	V	V	L	Q	G	I	F	R	N	P	L	V	N	P	H	I	I
Template Known Secondary structure																					T	T	S	S	T	T			S	S														T											.																T	T		T	T			T	T	T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	M	A	I	A	G	A	T	T	A	A	M	T	V	A	G	F	S	L	P	I	V	L	L	S	A	L	G	T	G	I	L	A	G	L	W	N	G	I	L	V	A	I	L	K	I	Q	P	F	V	A	T	L	I	L	M	V	A	G	R	G	V	A	Q	L	I	T	A	G	Q	I	V	T	F	N	S	P	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	T	S	G	S	A	F	G	G	T	L	A	I	F	F	G	F	S	L	Y	G	L	F	T	S	T	I	L	F	G	F	G	T	L	A	L	V	F	L	F	S	F	K	S	L	L	M	L	I	L	I	G	M	I	L	S	G	L	F	S	A	L	V	S	L	L	Q	Y	I	S	D	T	E	E	K	L	P	S	I
Template Known Secondary structure		S															T	T																										T																											S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	F	G	S	G	S	L	L	F	L	P	T	P	V	I	I	A	V	L	T	L	I	L	F	W	L	L	T	R	K	T	A	L	G	M	F	I	E	A	V	G	I	N	I	R	A	A	K	N	A	G	V	N	T	R	I	I	V	M	L	T	Y	V	L	S	G	L	C	A	A	I	A	G	I	I	V	A	A	D
Query Conservation
Alig confidence																																.																																																.	.
Template Conservation																																.																																																.	.
Template Sequence		V	F	W	L	M	G	S	F	A	T	S	N	W	E	K	L	L	F	F	F	V	P	F	L	L	C	S	S	I	L	.	L	S	L	S	W	R	L	N	L	L	S	L	D	E	K	E	A	K	A	L	G	V	K	M	A	P	L	R	W	L	V	I	F	L	S	G	S	L	V	A	C	Q	V	A	I	S	G	.	.
Template Known Secondary structure					T	T			S	T	T																					.			T	T	T	G	G	G	G	G	G	S								T	T																											.	.
Template Predicted Secondary structure																																.																																																.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.				.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		I	R	G	A	D	A	N	N	A	G	L	W	L	E	L	D	A	I	L	A	V	V	I	G	G	G	S	L	M	G	G	R	F	N	L	L	L	S	V	V	G	A	L	I	I	Q	G	M	N	T	G	I	L	L	.	.	.	S	G	F	P	P	E	M	N	Q	V	V	K	A	V	V	V	L	C	V	L	I	V	Q
Query Conservation																																																								.	.	.
Alig confidence		.	.	.	.	.	.																						.	.	.																									.	.	.
Template Conservation		.	.	.	.	.	.																						.	.	.
Template Sequence		.	.	.	.	.	.	S	I	G	W	V	G	L	I	I	P	H	L	S	R	M	L	V	G	A	N	H	.	.	.	Q	S	L	L	P	C	T	M	L	V	G	A	T	Y	M	L	L	V	D	N	V	A	R	S	L	S	D	A	E	I	P	I	S	I	L	T	A	L	I	G	A	P	L	F	G	V	L	V	Y	K
Template Known Secondary structure		.	.	.	.	.	.				S	S	T	T												S			.	.	.																									S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.																						.	.	.
Template SS confidence
								259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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