Job Description P39328 Confidence 36.29% Date Thu Jan 5 11:59:22 GMT 2012 Rank 4 Aligned Residues 207 % Identity 13% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	T	P	K	R	R	F	R	W	P	T	G	M	P	Q	L	V	A	L	L	L	V	L	L	V	D	S	L	V	A	P	H	F	W	Q	V	V	L	Q	D	G	R	L	F	G	S	P	I	D	I	L	N	R	A	A	P	V	A	L	L	A	I	G	M	T	L	V	I	A	T	G	G	I	D	L	S	V	G	A
Query Conservation
Alig confidence																																																																							.	.
Template Conservation																																																																							.	.
Template Sequence		K	R	A	G	F	E	E	Y	S	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	.	.	G	K	P	G	S	L	G	I	V
Template Known Secondary structure				T	T	T	T	T	S					S																						G	G	G	S	S	S	S																													.	.	S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		V	M	A	I	A	G	A	T	T	A	A	M	T	V	A	G	F	S	L	P	I	V	L	L	S	A	L	G	T	G	I	L	A	G	L	W	N	G	I	L	V	A	I	L	K	I	Q	P	F	.	.	.	V	A	T	L	I	L	M	V	A	G	R	G	V	A	Q	L	I	T	A	G	Q	I	V	T	F	N	S	P
Query Conservation																																																			.	.	.
Alig confidence																																									.										.	.	.
Template Conservation																																									.
Template Sequence		S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	.	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G
Template Known Secondary structure												T	T	T	T	T	T																								.				T	T				T	T																											S
Template Predicted Secondary structure																																									.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		166	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		D	L	S	W	F	.	.	.	G	S	G	S	L	L	F	L	P	T	P	V	I	I	A	V	L	T	L	I	L	F	W	L	L	T	R	K	T	A	L	G	M	F	I	E	A	V	G	I	N	I	R	A	A	K	N	A	G	V	N	T	R	I	I
Query Conservation							.	.	.
Alig confidence							.	.	.																															.	.	.												.	.	.	.
Template Conservation																																								.	.	.												.	.	.	.
Template Sequence		L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	.	.	.	G	L	R	V	S	S	Q	E	E	Y	V	.	.	.	.	G	L	D	L	S	Q	H
Template Known Secondary structure		G	G	G	T																																		T	.	.	.		S	B									.	.	.	.
Template Predicted Secondary structure																																								.	.	.												.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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