Job Description P39328 Confidence 1.37% Date Thu Jan 5 11:59:22 GMT 2012 Rank 69 Aligned Residues 199 % Identity 13% Template c1fftF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	F	R	W	P	T	G	M	P	Q	L	V	A	L	L	L	V	L	L	V	D	S	L	V	A	P	H	F	W	Q	V	V	L	Q	D	G	R	L	F	G	S	P	I	D	I	L	N	R	A	A	P	V	A	L	L	A	I	G	M	T	L	V	I	A	T	G	G	I	D	L	S	V	G	A	V	M	A	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	G	A	G	A	N	V	N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K	I	F	N	W	L	F	T	M	Y	Q	G	R	I	V	F	H	S	A	M	L	W	T	I	G
Template Known Secondary structure		T	S			S	S														T	T	S	S		G	G	G	G	T	T	T	T	T																T	T													T	T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		94	.	.	.	.	.	100																.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.														.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	T	T	A	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	A	G	F	S	L	P	I	V	L	L	S	A	L	G	T	G	I	L	A	G	L	W	N	G	I	L	V	A	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	Q	P	F	V	A	T	L	I	L	M	V
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I	I	G	G	V	V	F	G	C	F	A	G	M	T	Y	W	W	P	K	A	F	G	F	K	L	N	E	T	W	G	K	R	A	F	W	F	W	I	I	G	F	F	V
Template Known Secondary structure																	T	S						T	T	T	T	B													T	T	T												S					S	S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	G	V	A	Q	L	I	T	A	G	Q	I	V	T	F	N	S	P	D	L	S	W	F	G	S	G	S	L	L	F	L	P	T	P	V	I	I	A	V	L	T	L	I	L	F	W	L	L	T	R	K	T	A	L	G	M	F	I	E	A	V	G	I	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	D	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L	I	A	L	G	I	L	C	L	V	I	Q	M	Y	V	S	I	R	D	R	D	Q	N	R	D	L	T	G	D	P
Template Known Secondary structure												T	T		B	T	T		S					T	T																															S	S							S		S	S
Template Predicted Secondary structure
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions