Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 45 Aligned Residues 355 % Identity 12% Template d3thia_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.00

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		I	T	L	K	V	A	I	Y	P	Y	V	P	D	P	A	R	F	Q	A	A	V	L	D	Q	W	Q	R	Q	E	P	G	V	K	L	E	F	T	D	W	D	S	.	.	.	.	.	.	.	.	Y	S	A	D	P	P	D	D	L	D	V	F	V	L	D	S	I	F	L	S	H	F	V	D	A	G	Y	L	L	P	F
Template Known Secondary structure										S		S	S																		T	T	S									T	.	.	.	.	.	.	.	.	T	T					T	T								G	G	G							T	T					B
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.									50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I
Query Conservation
Alig confidence									.	.	.															.	.
Template Conservation									.	.	.															.	.
Template Sequence		G	S	Q	D	I	D	Q	.	.	.	A	E	D	V	L	P	F	A	L	Q	G	A	K	R	.	.	N	G	E	V	Y	G	L	P	Q	I	L	C	T	N	L	L	F	Y	R	K	G	D	L	K	I	G	Q	V	D	N	I	Y	E	L	Y	K	K	I	G	T	S	H	S	E	Q	I	P	P	P	Q	N	K	G	L
Template Known Secondary structure			G	G	G		T	T	.	.	.	G	G	G	B								T			.	.	T	T																		T	T						T			B																S	S
Template Predicted Secondary structure									.	.	.															.	.
Template SS confidence
		81	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																					.	.																			.	.	.	.
Query SS confidence																																					.	.																			.	.	.	.
Query Sequence		A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	.	.	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	.	.	.	.	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M
Query Conservation																																					.	.																			.	.	.	.
Alig confidence																																					.	.																			.	.	.	.
Template Conservation
Template Sequence		L	I	N	M	A	G	G	T	T	K	A	S	M	Y	L	E	A	L	I	D	V	T	G	Q	Y	T	E	Y	D	L	L	P	P	L	D	P	L	N	D	K	V	I	R	G	L	R	L	L	I	N	M	A	G	E	K	P	S	Q	Y	V	P	E	D	G	D	A	Y	V	R	A	S	W	F	A	Q	G	S	G	R	A
Template Known Secondary structure							S																	T						S	S				S	S	S																										T	T			T	T									T	B
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		F	I	G	Y	S	E	S	M	M	R	M	G	D	Y	A	E	Q	.	.	V	R	F	K	P	I	S	S	S	A	G	Q	D	I	P	L	F	Y	S	D	V	V	S	V	N	S	K	T	A	H	P	E	L	A	K	K	L	A	N	V	M	A	S	A	D	T	V	E	Q	A	L	R	P	Q	A	D	G	Q	Y	P	Q
Template Known Secondary structure						T	T						G	G	G	G	G	T	.	.							B	S		S	S															T	T		S														S									S			S	T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S	T	T	L	Q	A	S	Q	K	K
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	L	P	A	R	H	Q	V	Y	E	A	L	M	Q	D	Y	P	I	Y	S	E	L	A	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	K	P	S	N	R	V	F	R	L	G	P	E	V	R	T	W	L	K	D	A	K	Q	V
Template Known Secondary structure						S	B								T	T	T		T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T		T	T								T	T									T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																														340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		423	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	E	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions