Job Description P76042 Confidence 99.97% Date Thu Jan 5 12:17:42 GMT 2012 Rank 60 Aligned Residues 303 % Identity 13% Template d2onsa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	.	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D
Query Conservation																																																																		.
Alig confidence											.	.	.																																						.	.	.													.
Template Conservation											.	.	.																																						.	.	.
Template Sequence		N	V	K	L	K	V	F	H	A	.	.	.	G	S	L	T	E	P	M	K	A	F	K	R	A	F	E	E	K	H	P	N	V	E	V	Q	T	E	A	A	G	S	A	A	T	I	R	K	V	.	.	.	T	E	L	G	R	K	A	D	V	I	A	T	A	D	Y	T	L	I	Q	K	M	M	Y	P	E	F	A	N
Template Known Secondary structure											.	.	.	G	G	G																T	T																		.	.	.		T	S					S					S	S									T	T	T	T		S
Template Predicted Secondary structure											.	.	.																																						.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y
Query Conservation
Alig confidence							.																									.	.																						.	.	.	.
Template Conservation							.																									.	.																						.	.	.	.
Template Sequence		W	T	I	M	F	.	A	K	N	Q	I	V	L	A	Y	R	N	D	S	R	Y	A	D	E	I	N	S	Q	N	W	.	.	Y	E	I	L	K	R	P	D	V	R	F	G	F	S	N	P	N	D	D	P	C	.	.	.	.	G	Y	R	S	L	M	A	I	Q	L	A	E	L	Y	Y	N	D	P	T	I	F	D	E
Template Known Secondary structure							.											T	T	S	T	T	T	T	T			T	T	T		.	.					T	S	T	T								T	T	T				.	.	.	.															T	T		T	T
Template Predicted Secondary structure							.																									.	.																						.	.	.	.
Template SS confidence
		106	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S
Query Conservation
Alig confidence															.	.	.	.	.																																									.
Template Conservation															.	.	.	.	.																																									.
Template Sequence		L	V	A	K	N	S	N	L	R	F	S	E	D	.	.	.	.	.	N	G	S	Y	V	L	R	M	P	S	S	E	R	I	E	I	N	K	S	K	I	M	I	R	S	M	E	M	E	L	I	H	L	V	E	S	G	E	L	D	.	Y	F	F	I	Y	K	S	V	A	K	Q	H	G	F	N	F	V	E	L	P	V
Template Known Secondary structure			T	G	G	G	B	S							.	.	.	.	.	T	T									G	G	G			B		T	T	T					S	S	G	G	G								T	S		S	.												T	T								T
Template Predicted Secondary structure															.	.	.	.	.																																									.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V
Query Conservation
Alig confidence																																	.	.																																				.	.	.
Template Conservation																																	.	.																																				.	.	.
Template Sequence		E	I	D	L	S	S	P	D	Y	A	E	L	Y	S	K	V	K	V	V	L	A	N	G	K	E	V	T	G	K	P	I	.	.	V	Y	G	I	T	I	P	K	N	A	E	N	R	E	L	A	V	E	F	V	K	L	V	I	S	E	E	G	Q	E	I	L	R	E	L	.	.	.	G	Q	E	P	L	V	P	P	R
Template Known Secondary structure		T	T	S	S			G	G	G					T	T						T	T	S									.	.								T	T		T	T													S										T	.	.	.	T
Template Predicted Secondary structure																																	.	.																																				.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.
		347	.	.			350	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		V	T	T	.	.	A	T	W	K	D
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		A	D	T	A	V	P	S	L	K	A
Template Known Secondary structure			S	S			G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions