Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 54 Aligned Residues 280 % Identity 15% Template d1y4ta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K	A
Query Conservation
Alig confidence												.	.	.	.															.
Template Conservation												.	.	.	.															.
Template Sequence		E	L	N	I	Y	S	A	R	H	Y	.	.	.	.	N	A	D	F	E	I	I	K	K	F	E	E	K	T	.	G	I	K	V	N	H	T	Q	A	K	A	S	E	L	I	K	R	L	S	L	E	G	S	N	S	P	A	D	I	F	I	T	A	D	I	S	N	L	T	E	A	K	N	L	G	L	L	S	P	V	S
Template Known Secondary structure												.	.	.	.	T														.																						G	G	G									S	S										T	T
Template Predicted Secondary structure												.	.	.	.															.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I	A
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.																	.	.																								.	.															.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.																	.	.																								.	.															.	.	.	.	.	.	.	.
Template Sequence		S	.	.	.	.	.	.	.	.	.	.	K	Y	L	E	E	F	I	P	A	H	L	R	D	K	D	K	.	.	E	W	F	A	I	T	K	R	A	R	I	I	A	Y	N	K	N	T	N	I	D	I	S	.	.	K	M	K	N	Y	E	D	L	A	K	A	E	F	K	.	.	.	.	.	.	.	.	G	E	I	V
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.							S		G	G	G	B		T	T	S	.	.	S															T	T	S					T	.	.	T			S	G	G	G	G	G		G	G	G	T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																	.	.																								.	.															.	.	.	.	.	.	.	.
Template SS confidence
		81											.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.									.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S	T	Y
Query Conservation																																																											.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	S	A	T	A	P	Y	S	K	T	L	L	A	S	I	I	A	N	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	E	A	K	A	W	A	K	G	V	L	E	N	L	A	T	N	P	K	G	G	D	R	D	Q	A	R	Q	V	F	A	G	E	A	K	F	A	V	M	N	T	Y
Template Known Secondary structure					T	T	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															B	S	S	S			S	S											T	S		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		269	270	.	.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		I	L	P	A	V	I	K	E	G	D	P	.	.	.	.	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																																																									.	.
Template Conservation																																																																									.	.
Template Sequence		Y	I	G	L	L	K	N	S	K	N	P	K	D	V	E	V	G	N	S	L	G	I	I	F	P	N	Q	D	N	R	G	T	H	I	N	I	S	G	I	A	M	T	K	S	S	K	N	Q	D	A	A	K	K	F	M	E	F	M	L	S	P	E	I	Q	K	I	L	T	D	S	N	.	.	Y	E	F	P	I	R	N
Template Known Secondary structure								T		S	S									T						T	T	T	T	T	T		B											T	T		S													T	S												.	.					S	S	T
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280
		345	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	V	T	T	A	T	W	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	E	L	S	Q	T	V	K	D
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions