Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 55 Aligned Residues 282 % Identity 12% Template d1xvxa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.53

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I
Query Conservation
Alig confidence															.	.	.	.															.
Template Conservation															.	.	.	.															.
Template Sequence		S	N	D	S	G	I	V	V	Y	N	A	Q	H	.	.	.	.	E	N	L	V	K	S	W	V	D	G	F	T	K	D	.	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F
Template Known Secondary structure					S								S		.	.	.	.															.																							G	G	G				S					S	S	S									T	T		B
Template Predicted Secondary structure															.	.	.	.															.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																.	.																								.	.															.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.																.	.																								.	.															.	.	.	.	.	.	.	.
Template Sequence		A	P	L	D	A	.	.	.	.	.	.	.	.	.	.	.	V	T	Q	A	Q	V	A	Q	E	Y	R	P	E	H	G	.	.	R	W	T	G	I	A	A	R	S	T	V	F	V	Y	N	P	E	K	I	S	E	A	E	.	.	L	P	K	S	I	M	D	L	A	K	P	E	W	K	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.						B		G	G	G	S		S	S	S	.	.	S															T	T	T	S		G	G	G	.	.	S		S	S	G	G	G	G	G	S	G	G	G	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																.	.																								.	.															.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.												.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y
Query Conservation
Alig confidence		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		.	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	M	L	E	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	A	T	L	E	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	N	S	T	.	V	M	K	A	V	N	A	G	Q	I	D	G	G	V	I
Template Known Secondary structure		.	T	S					T	T	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S	S				.							T	T	S	S	S
Template Predicted Secondary structure		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
			134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.																	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A
Query Conservation
Alig confidence																																																																									.
Template Conservation																																																																									.
Template Sequence		Y	H	Y	Y	R	F	V	D	Q	A	K	T	G	E	N	S	G	K	T	Q	L	H	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	P	K	E	A	Q	E	F	V	K	W	I	T	G	K	S	G	Q	D	I	L	R	T	N	N	A	.	F	E	Y	A	V	G	V	D
Template Known Secondary structure			T								T	T	T		T	T	T	T	T								T	T		G	G	G										B	T	T		S	S													S										S	S	S	.			B			B	T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.
		346	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	T	T	A	T	W	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	S	N	P	K	L	V	P
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions