Return to main results Retrieve Phyre Job Id

Job DescriptionP76042
Confidence99.97%DateThu Jan 5 12:17:42 GMT 2012
Rank56Aligned Residues279
% Identity15%Templated1xc1a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.51

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90.........100.........
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Query Sequence  SIEFMHSSVEQERQAVISKLIARFEKENPGITVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKA
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Template Sequence  DITVYNGQH. . . . KEAAQAVADAFTRA. TGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLP
Template Known Secondary structure 

S
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TT
TTSS
SS
TT
B



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   1........ 10.........20... ......30.........40.........50.........60.........70.....
 
   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  VATVISNVGEGAFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLNDPANKKYGIA
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Template Sequence  ASTINETRGK. . . . . . . . . . . GVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNY. . . . . . . . . . . ATPKWKNRI
Template Known Secondary structure  T

T...........TS


TTS

TTT

GGGS
SSGGGG...........SSGGGTTT
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   76...80..... ....90.........100.........110.........120.... .....130...
 
   190.........200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  LPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLTANTMPGSNDIMEVKDAFMNGTAPMAIYSTYI
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Template Sequence  GYVPTSGAFLEQIVAIVKLKG. . . . . . . . . . . . . . . . EAAALKWLKGLKEYG. KPYAKNSVALQAVENGEIDAALINNYY
Template Known Secondary structure 
TT

................S.
SSTTSSS
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   134.....140.........150.... .....160......... 170.........180.........190......
 
   270.........280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  LPAVIKEGDPKNVGFVVPTEKNSAVYGMLTSLTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVTT
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Template Sequence  WHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVR. . AEYPLNPHVVST
Template Known Secondary structure 
GGG




TT
GGG
BTT
S
STTTS..

SSTT


S
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   197..200.........210.........220.........230.........240.........250.........260.. .......270....
 
   350....
Predicted Secondary structure 
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Query Sequence  ATWKD
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Template Conservation       
Template Sequence  FNLEP
Template Known Secondary structure  S



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   275....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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