Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 49 Aligned Residues 319 % Identity 15% Template d1pota_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	.	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D
Query Conservation																																											.
Alig confidence																.	.	.	.	.												.											.											.	.
Template Conservation																.	.	.	.	.												.																						.	.
Template Sequence		N	N	T	L	Y	F	Y	N	W	T	E	Y	V	P	.	.	.	.	.	P	G	L	L	E	Q	F	T	K	E	T	.	G	I	K	V	I	Y	S	T	Y	E	S	N	E	T	M	Y	A	K	L	K	T	.	.	Y	K	D	G	A	Y	D	L	V	V	P	S	T	Y	Y	V	D	K	M	R	K	E	G	M	I	Q
Template Known Secondary structure											S	S	S	S		.	.	.	.	.	T	T										.										S										T	T	.	.		S	S	S		S	S	B	B			B	G	G	G								T		B
Template Predicted Secondary structure																.	.	.	.	.												.																						.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y
Query Conservation
Alig confidence					.	.	.																									.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.																									.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	D	.	.	.	K	S	K	L	T	N	F	S	N	L	D	P	D	M	L	N	K	P	F	D	P	N	N	D	.	.	Y	S	I	P	Y	I	W	G	A	T	A	I	G	V	N	G	D	A	V	D	P	K	S	V	T	S	W	A	D	L	W	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.	T	T	S		T	T	G	G	G	B		G	G	G	S			T	T	S	T	T		S	.	.	S															T	T	T	S		T	T	T			S	S	G	G	G	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.																									.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S
Query Conservation
Alig confidence																																		.	.	.	.	.	.																			.	.
Template Conservation																																		.	.	.	.	.	.																			.	.
Template Sequence		E	Y	K	G	S	L	L	L	T	D	D	A	R	E	V	F	Q	M	A	L	R	K	L	G	Y	S	G	N	T	T	D	P	.	.	.	.	.	.	K	E	I	E	A	A	Y	N	E	L	K	K	L	M	P	N	V	A	.	.	A	F	N	S	D	N	P	A	N	P	Y	M	E	G	E	V	N	L	G	M	I	W
Template Known Secondary structure		G	G	T	T						S													T	T			T	T					.	.	.	.	.	.													T	G	G	G			.	.				S	S		T						T	T	S		S
Template Predicted Secondary structure																																		.	.	.	.	.	.																			.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.																																									.	.
Template Conservation																								.	.	.	.	.	.	.																																									.	.
Template Sequence		N	G	S	A	F	V	A	R	Q	A	G	T	P	I	D	V	V	W	P	K	E	G	.	.	.	.	.	.	.	G	I	F	W	M	D	S	L	A	I	P	A	N	A	K	N	K	E	G	A	L	K	L	I	N	F	L	L	R	P	D	V	A	K	Q	V	A	E	T	I	.	.	G	Y	P	T	P	N	L	A	A
Template Known Secondary structure										T	T	S									T	T		.	.	.	.	.	.	.									B		B	T	T		T	T													S												.	.					S	B	S	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.																																									.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.								.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300
		347	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		V	T	.	.	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G
Query Conservation				.	.
Alig confidence				.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	L	L	S	P	E	V	A	N	D	K	T	L	Y	P	D	A	E	T	I	K	N	G	E	W	Q	N	D	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	S	I	Y	E	E	Y	Y	Q	K	L	K	A	G
Template Known Secondary structure		T	T	T	S						T		T	T	T	S									S							G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G												T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.																		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions