Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 1 Aligned Residues 386 % Identity 21% Template d1eu8a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.90

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	.	.	.	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q
Query Conservation																																																			.	.	.
Alig confidence													.																																						.	.	.
Template Conservation													.
Template Sequence		E	E	G	K	I	V	F	A	V	G	G	.	A	P	N	E	I	E	Y	W	K	G	V	I	A	E	F	E	K	K	Y	P	G	V	T	V	E	L	K	R	Q	A	T	D	T	E	Q	R	R	L	D	L	V	N	A	L	R	G	K	S	S	D	P	D	V	F	L	M	D	V	A	W	L	G	Q	F	I	A	S	G
Template Known Secondary structure			S	S									.	S																		S	T	T										S	S													T	T	T		S	S								T	T	T								T
Template Predicted Secondary structure													.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		L	I	D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	.	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A
Query Conservation																																																													.
Alig confidence																																		.																											.
Template Conservation																																		.
Template Sequence		W	L	E	P	L	D	D	Y	V	Q	K	D	N	Y	D	L	S	V	F	F	Q	S	V	I	N	L	A	D	K	Q	G	G	.	K	L	Y	A	L	P	V	Y	I	D	A	G	L	L	Y	Y	R	K	D	L	L	E	K	Y	G	Y	S	K	P	P	E	T	W	Q	E	L	V	E	M	A	Q	K	I	Q	S	G	E
Template Known Secondary structure			B			S								T			G	G	G	B									T			T	T	.																								T	T			S			S	B
Template Predicted Secondary structure																																		.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		183	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.							.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																																	.	.	.																											.	.	.	.	.	.
Query SS confidence					.	.	.	.																																	.	.	.																											.	.	.	.	.	.
Query Sequence		N	K	K	.	.	.	.	Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	.	.	.	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	.	.	.	.	.	.	G	S	N	D	I	M
Query Conservation					.	.	.	.																																	.	.	.																											.	.	.	.	.	.
Alig confidence					.	.	.	.																																	.	.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	T	N	P	N	F	W	G	F	V	W	Q	G	K	Q	Y	E	G	L	V	C	D	F	V	E	Y	V	Y	S	N	G	G	S	L	G	E	F	K	D	G	K	W	V	P	T	L	N	K	P	E	N	V	E	A	L	Q	F	M	V	D	L	I	H	K	Y	K	I	S	P	P	N	T	Y	T	E	M	T	E	E
Template Known Secondary structure		T	T	T		T	T									S	S	S													T	T	T			S					T	T						T	T																	T	S			S		G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	.	.	.	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D
Query Conservation																														.	.	.
Alig confidence																														.	.	.
Template Conservation
Template Sequence		P	V	R	L	M	F	Q	Q	G	N	A	A	F	E	R	N	W	P	Y	A	W	G	L	H	N	A	D	D	S	P	V	K	G	K	V	G	V	A	P	L	P	H	F	P	G	H	K	S	A	A	T	L	G	G	W	H	I	G	I	S	K	Y	S	D	N	K	A	L	A	W	E	F	V	K	F	V	E	S	Y	S
Template Known Secondary structure									T	T									T							T	S	T	T		T	T	T	T									B		T	T	S					B									B	T	T		S													T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T
Query Conservation
Alig confidence											.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Q	K	G	F	A	M	N	L	.	.	G	W	N	P	G	R	V	D	V	Y	D	D	P	A	V	V	S	K	S	P	H	L	K	E	L	R	A	V	F	E	N	A	V	P	R	P	I	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	P	Q	L	S	E	I	I	Q	K	Y	V	N	S	A	L
Template Known Secondary structure										T	.	.				B	S	B	T	T	G	G	G	S								T					T						T		B						T	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure											.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.														.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	K	A	D	L	S	T	T	L	Q	A	S	Q	K	K	L	D	E	L	I	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	K	I	S	P	Q	E	A	L	D	K	A	Q	K	E	A	E	E	L	V	K	Q
Template Known Secondary structure			T	S	S																		T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions