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Job DescriptionP76042
Confidence100.00%DateThu Jan 5 12:17:42 GMT 2012
Rank24Aligned Residues372
% Identity19%Templated1elja_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.85

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  NKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGITVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQL
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Template Sequence  KIEEGKVVIWHAM. QPNELEVFQSLAEEYMA. LPEVEIVFEQKP. . NLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGL
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T..TTTTT
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   2.......10.... .....20.........30. ........40... ......50.........60.........70.......
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  IDRKAVATVISNVGEGAFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLNDPANK
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Template Sequence  LEPIDEYVTEDL. . LNEFAPMAQDAMQY. . KGHYYALPFAAETVAIIYNKEMVS. . . . EPPKTFDEMKAIMEKYYDPANE
Template Known Secondary structure  B


TTT

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T..TT

TTT
S....S

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BGGGT
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   7980.........90 .........100.... .....110.........120........ .130.........140.........150
 
   185....190.........200.........210........ .220.........230.........240.........250.........260...
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Query Sequence  KYGIALPTAESVLTEQSFSQFALSNQANVFNAEG. KITLDTPEMMQALTYYRDLTANTMPGSNDIMEVKDAFMNGTAPMA
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Template Sequence  KYGIAWPIN. . . . . AYFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMM
Template Known Secondary structure  B
S
B


S.....TTTS

STTTT
TTSTGGGS
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   151........ 160.........170.........180.........190.........200.........210.........220.....
 
   264.....270.........280.........290. ........300.........310.........320.........330.........340
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Query Sequence  IYSTYILPAVIKEGDPKNVGFVVPTEKN. . . SAVYGMLTSLTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAAL
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Template Sequence  VNGPWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALEL. GYI
Template Known Secondary structure 
GGGTT





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BTT
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   226...230.........240.........250.........260.........270.........280.........290.........300. ...
 
   341........350.........360.........370.........380.........390.........400.........410 ........
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Query Sequence  PVNKAVVTTATWKDNDVIKALGELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKA. . DLSTTLQA
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Template Sequence  PVLTKVLDDPEIKNDPVIYGFGQAVQ. . . . . . . . . . . . . . HAYLMPKSPKMSAVWGGVDGAINEILQDPQNADIEGILKK
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BGGGGG
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TTTSTTT

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   305....310.........320.........330 .........340.........350.........360.........370
 
   419420........
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Query Sequence  SQKKLDELIE
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Template Sequence  YQQEILNNMQ
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   371........380
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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