Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 24 Aligned Residues 372 % Identity 19% Template d1elja_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.85

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L
Query Conservation
Alig confidence															.																		.													.	.
Template Conservation															.																		.													.	.
Template Sequence		K	I	E	E	G	K	V	V	I	W	H	A	M	.	Q	P	N	E	L	E	V	F	Q	S	L	A	E	E	Y	M	A	.	L	P	E	V	E	I	V	F	E	Q	K	P	.	.	N	L	E	D	A	L	K	A	A	I	P	T	G	Q	G	P	D	L	F	I	W	A	H	D	W	I	G	K	F	A	E	A	G	L
Template Known Secondary structure															.																		.												T	.	.	T									T	T	T	T		S		S						G	G	G							T	T
Template Predicted Secondary structure															.																		.													.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K
Query Conservation
Alig confidence														.	.															.	.																									.	.	.	.
Template Conservation														.	.															.	.																									.	.	.	.
Template Sequence		L	E	P	I	D	E	Y	V	T	E	D	L	.	.	L	N	E	F	A	P	M	A	Q	D	A	M	Q	Y	.	.	K	G	H	Y	Y	A	L	P	F	A	A	E	T	V	A	I	I	Y	N	K	E	M	V	S	.	.	.	.	E	P	P	K	T	F	D	E	M	K	A	I	M	E	K	Y	Y	D	P	A	N	E
Template Known Secondary structure		B				T	T	T						.	.		T	T	B								T			.	.	T	T																		T	T	T		S	.	.	.	.	S			S	S													B	G	G	G	T
Template Predicted Secondary structure														.	.															.	.																									.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		K	Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	.	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A
Query Conservation																																				.
Alig confidence											.	.	.	.	.																					.
Template Conservation											.	.	.	.	.
Template Sequence		K	Y	G	I	A	W	P	I	N	.	.	.	.	.	A	Y	F	I	S	A	I	A	Q	A	F	G	G	Y	Y	F	D	D	K	T	E	Q	P	G	L	D	K	P	E	T	I	E	G	F	K	F	F	F	T	E	I	W	P	Y	M	A	P	T	G	D	Y	N	T	Q	Q	S	I	F	L	E	G	R	A	P	M	M
Template Known Secondary structure		B		S		B				S	.	.	.	.	.									T	T	T	S			S			T	T	T	T				T	T	S														T	G	G	G	S		S													T	T	S	S	S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	.	.	.	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L
Query Conservation																														.	.	.
Alig confidence																														.	.	.																																														.
Template Conservation																																																																														.
Template Sequence		V	N	G	P	W	S	I	N	D	V	K	K	A	G	I	N	F	G	V	V	P	L	P	P	I	I	K	D	G	K	E	Y	W	P	R	P	Y	G	G	V	K	L	I	Y	F	A	A	G	I	K	N	K	D	A	A	W	K	F	A	K	W	L	T	T	S	E	E	S	I	K	T	L	A	L	E	L	.	G	Y	I
Template Known Secondary structure					G	G	G							T	T														T	T																	B	T	T		S																											.			B
Template Predicted Secondary structure																																																																														.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		P	V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	.	.	D	L	S	T	T	L	Q	A
Query Conservation																																																																								.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	L	T	K	V	L	D	D	P	E	I	K	N	D	P	V	I	Y	G	F	G	Q	A	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	Y	L	M	P	K	S	P	K	M	S	A	V	W	G	G	V	D	G	A	I	N	E	I	L	Q	D	P	Q	N	A	D	I	E	G	I	L	K	K
Template Known Secondary structure				B	G	G	G	G	G						T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								T	T																	T	S	T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330															.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		419	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	K	K	L	D	E	L	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Q	Q	E	I	L	N	N	M	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions