Phyre 2 alignment of P76042 with c3rpwA

Job Description P76042
Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012

Rank 51 Aligned Residues 328

% Identity 15% Template c3rpwA_

PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009

Resolution 1.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																							.
Query SS confidence																				.																																							.
Query Sequence	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	.	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	.	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R
Query Conservation																				.																																							.
Alig confidence								.	.											.										.														.	.														.							.
Template Conservation								.	.																					.														.	.																					.
Template Sequence	V	V	I	X	Q	D	P	.	.	G	G	G	Y	G	D	A	L	R	K	V	X	Y	D	P	F	E	K	E	T	.	G	I	K	V	V	T	V	Q	E	A	R	S	G	.	.	P	R	I	K	A	Q	A	E	A	G	K	A	Q	W	D	L	T	F	I	F	.	D	Q	E	T	K	L	L	G	D	C	C	L	A	D
Template Known Secondary structure								.	.												T									.	S									S				.	.										T					S	B					.							T					B
Template Predicted Secondary structure								.	.																					.														.	.																					.
Template SS confidence
	31	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.

	108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.																																			.	.																	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																																			.	.																	.	.	.	.	.	.	.	.
Template Sequence	I	D	Y	S	K	L	S	E	S	A	.	.	.	.	.	.	.	H	K	T	L	A	A	X	P	D	N	L	K	R	K	K	G	V	A	L	Q	V	I	G	V	G	L	V	Y	N	K	D	K	F	K	.	.	G	D	K	A	P	Q	T	W	A	D	F	W	D	V	K	K	.	.	.	.	.	.	.	.	F	P	G
Template Known Secondary structure			G	G	G	S					.	.	.	.	.	.	.						T	S		G	G	G			T	T															T	T	T	S		.	.	T	T	S	S			S							T	T	T	.	.	.	.	.	.	.	.	S		S
Template Predicted Secondary structure											.	.	.	.	.	.	.																																			.	.																	.	.	.	.	.	.	.	.
Template SS confidence
	105	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.									.	.	.

	188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S	T
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.
Template Sequence	R	R	C	X	P	A	W	P	R	F	T	F	E	A	A	L	X	A	D	G	V	T	K	D	.	.	.	.	.	.	.	.	.	K	L	Y	P	I	D	X	D	R	A	L	K	K	L	K	E	I	K	P	H	V	V	K	W	W	T	T	A	A	Q	P	P	Q	L	I	L	D	G	E	A	D	X	C	L	A	Y	T
Template Known Secondary structure						S	S	S	T	T									T	T			T	T	.	.	.	.	.	.	.	.	.	S			S														G	G	G							S	T	T								T	T	S		S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.										.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

	268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V	V
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation																				.	.	.	.	.	.	.	.	.																																									.	.
Template Sequence	G	S	X	S	K	L	A	L	E	G	A	P	I	D	L	T	F	N	Q	.	.	.	.	.	.	.	.	.	G	F	V	Y	Y	D	F	F	S	I	P	K	G	A	P	N	Y	D	N	A	L	K	L	L	S	W	R	L	D	P	K	R	A	A	Q	L	T	S	T	F	.	.	P	V	A	L	P	S	K	V	V	F
Template Known Secondary structure										T		S								.	.	.	.	.	.	.	.	.											B	T	T		T	T												T												S	.	.			B		S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																																									.	.
Template SS confidence
	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.										.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.

	348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V
Query Conservation
Alig confidence	.	.
Template Conservation	.	.
Template Sequence	.	.	D	A	A	T	D	K	N	I	A	R	Y	W	A	N	N	P	E	N	V	A	K	A	I	E	W	S	P	D	F	W	G	A	P	S	P	A	G	N	S	T	N	E	E	Y	G	Q	E	K	L	N	A	X	L
Template Known Secondary structure	.	.				S		G	G	G	G	G	G	S	T	T	S							S										S	B		T	T	S	S	S	B
Template Predicted Secondary structure	.	.
Template SS confidence
			308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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