Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 16 Aligned Residues 365 % Identity 18% Template c3o3uN_ PDB info PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D
Query Conservation
Alig confidence												.	.																				.								.	.
Template Conservation												.	.																				.								.	.
Template Sequence		E	E	G	K	L	V	I	W	I	N	.	.	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	.	G	I	K	V	T	V	E	.	.	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A
Template Known Secondary structure			T	T								.	.	T	T	S																	.								.	.			T	T										T	T	T		S		S						G	G	G							T	T		B
Template Predicted Secondary structure												.	.																				.								.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y
Query Conservation
Alig confidence						.	.	.	.																						.	.																						.	.	.	.
Template Conservation						.	.	.	.																						.	.																						.	.	.	.
Template Sequence		E	I	T	P	.	.	.	.	D	K	A	F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	N	G	K	.	.	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	.	.	.	.	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L
Template Known Secondary structure						.	.	.	.						T	T	B								T			T	T		.	.			S														T	T	T		S	.	.	.	.	S			S	B	G	G	G										T	T	T
Template Predicted Secondary structure						.	.	.	.																						.	.																						.	.	.	.
Template SS confidence
		78	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.																													.
Query SS confidence																																		.	.	.	.	.	.																													.
Query Sequence		G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	.	.	.	.	.	.	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	D	I	M	E	V	K	D	A	F	M	N	G	T
Query Conservation																																		.	.	.	.	.	.																													.
Alig confidence								.	.	.	.	.	.																					.	.	.	.	.	.																													.
Template Conservation								.	.	.	.	.	.
Template Sequence		M	F	N	L	Q	E	.	.	.	.	.	.	P	Y	F	T	W	P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E
Template Known Secondary structure						S	S	.	.	.	.	.	.											T	T								T	T									S	S	S																T	T	S	S		T	T												T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		A	P	M	A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	.	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A
Query Conservation																																																															.
Alig confidence																			.																																												.																.	.
Template Conservation																			.																																																												.	.
Template Sequence		T	A	M	T	I	N	G	P	W	A	W	S	N	I	D	T	S	.	K	V	N	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	.	.	P
Template Known Secondary structure									G	G	G								.	T										B	B	T	T	B														B	T	T		S												T	T	S	S											S	.	.
Template Predicted Secondary structure																			.																																																												.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S	T	T	L	Q	A
Query Conservation
Alig confidence												.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	A	V	A	L	K	S	Y	E	.	E	E	L	A	K	D	P	R	I	A	A	T	M	E	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	G	E	I	M	P	N	I	P	Q	M	S	A	F	W	Y	A	V	R	T	A	V	I	N	A	A	S	G	R	Q	T	V	D	A	A	L	A	A
Template Known Secondary structure			S			S	B					.				T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S						S	T	T																		T	S	S
Template Predicted Secondary structure												.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.															.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	K	K	L	D	E	L	I	E	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	T	N	A	A	A	A	S	A	Q	N
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions