Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 21 Aligned Residues 363 % Identity 17% Template c3mp6A_ PDB info PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 Resolution 1.48 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I
Query Conservation
Alig confidence													.	.																				.								.	.
Template Conservation													.	.																				.								.	.
Template Sequence		I	E	E	G	K	L	V	I	W	I	N	.	.	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	.	G	I	K	V	T	V	E	.	.	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L
Template Known Secondary structure		T	T	T	T	S							.	.	T	T	S																	.								.	.			T	T											T	T		S		S						G	G	G							T	T		B
Template Predicted Secondary structure													.	.																				.								.	.
Template SS confidence
		740	.	.	.	.	.	.	.	.	.	750			.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.		770	.	.	.	.	.	.			.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K
Query Conservation
Alig confidence											.	.	.	.																		.	.																						.	.	.	.
Template Conservation											.	.	.	.																		.	.																						.	.	.	.
Template Sequence		A	E	I	T	P	D	K	A	F	.	.	.	.	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	N	G	K	.	.	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	.	.	.	.	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A
Template Known Secondary structure											.	.	.	.			T	B								T			T	T		.	.			S														T	T	T		S	.	.	.	.	S			S	B	G	G	G										T	T	T
Template Predicted Secondary structure											.	.	.	.																		.	.																						.	.	.	.
Template SS confidence
		815	.	.	.	.	820	.	.	.					.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840			.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.					.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.																													.
Query SS confidence																																			.	.	.	.	.	.																													.
Query Sequence		Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	.	.	.	.	.	.	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	D	I	M	E	V	K	D	A	F	M	N	G
Query Conservation																																			.	.	.	.	.	.																													.
Alig confidence									.	.	.	.	.	.																					.	.	.	.	.	.																													.
Template Conservation									.	.	.	.	.	.
Template Sequence		L	M	F	N	L	Q	E	.	.	.	.	.	.	P	Y	F	T	W	P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G
Template Known Secondary structure						S	S	S	.	.	.	.	.	.	G	G	G	T							T	T								T	T									T	T	S																T	T	S	S		T	T												T	T
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		885	.	.	.	.	890	.							.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		T	A	P	M	A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	.	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G
Query Conservation																																																																.
Alig confidence																				.																																												.															.	.	.
Template Conservation																				.																																																											.	.	.
Template Sequence		E	T	A	M	T	I	N	G	P	W	A	W	S	N	I	D	T	S	.	K	V	N	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	.	.	.
Template Known Secondary structure		S								G	G	G							S	.	S										B	B	T	T	B														B	T	T		T	T											T	T	S	S											.	.	.
Template Predicted Secondary structure																				.																																																											.	.	.
Template SS confidence
		959	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.		.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	P	V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S	T	T	L	Q
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	L	G	A	V	A	L	K	S	Y	E	E	E	L	A	K	D	P	R	I	A	A	T	M	E	N	A	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	I	M	P	N	I	P	Q	M	S	A	F	W	Y	A	V	R	T	A	V	I	N	A	A	S	G	R	Q	T	V	D	E	A	L	A
Template Known Secondary structure		S			S			S	B								T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S	T	T																		T	S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1035	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.															.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100
		418	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	K	K	L	D	E	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	Q	T	N	A	A	A	E	F
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
		1101	.	.	.	.	.	.	.	.	1110

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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