Job Description P76042 Confidence 99.90% Date Thu Jan 5 12:17:42 GMT 2012 Rank 67 Aligned Residues 285 % Identity 9% Template c3cg1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate Resolution 1.60 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																	.	.	.																																		.
Query SS confidence																																	.	.	.																																		.
Query Sequence		N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	.	.	.	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	.	S	H	D	Y	A	K	V	M	D	K	E	Q
Query Conservation																																	.	.	.																																		.
Alig confidence											.	.	.																				.	.	.														.																				.
Template Conservation											.	.	.																																				.
Template Sequence		E	V	T	L	I	V	F	H	A	.	.	.	G	S	L	S	V	P	F	Q	E	V	E	K	E	F	S	E	Y	A	E	R	N	L	G	I	K	V	S	F	Q	D	E	A	S	G	S	.	V	M	A	V	R	K	V	T	D	L	G	R	K	A	D	V	I	G	V	A	D	Y	T	L	I	P	Q	L	L	I	P	N
Template Known Secondary structure											.	.	.	G	G	G																				S													.									T	S					S					S	S	T	T						T	T	T	T
Template Predicted Secondary structure											.	.	.																																				.
Template SS confidence
		32	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N
Query Conservation
Alig confidence																.																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	D	F	Y	V	L	F	A	T	N	E	I	V	.	I	A	F	T	D	K	S	R	Y	V	E	E	M	K	S	N	P	D	K	W	Y	E	I	L	A	R	E	D	V	R	F	G	F	S	D	.	.	.	.	.	.	.	.	.	.	.	P	N	Q	D	P	C	G	Y	R	S	L	M	V	I	K	L	A	D	L
Template Known Secondary structure		T		S												.					T	T	S	T	T								G	G	G						T	S	T	T								.	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																.																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.												.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A
Query Conservation
Alig confidence																						.																																	.	.	.	.	.
Template Conservation																						.																																	.	.	.	.	.
Template Sequence		Y	Y	G	K	E	I	F	K	E	L	I	E	E	N	T	N	I	Y	S	N	.	G	T	Q	I	Y	A	P	K	E	I	T	V	N	P	G	K	I	V	I	R	P	K	E	T	D	L	L	G	L	V	E	S	.	.	.	.	.	G	S	I	D	Y	I	F	I	Y	K	S	V	A	K	Q	H	N	L	S	Y	I	T
Template Known Secondary structure				T	S							T	T	T	T	B	S					.	T	T						S	S			B		T	T	T					S	S	G	G	G	G							.	.	.	.	.	T	S	S	S												T	T
Template Predicted Secondary structure																						.																																	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.						.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		L	P	S	E	I	N	L	G	D	F	S	K	E	K	F	Y	G	Q	I	S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	I	.	V	Y	G	V	T	V	L	K	D	A	P	N	R	E	V	A	I	E	F	L	R	Y	L	L	S	E	N	G	K	R	I	F	E	K	N	H
Template Known Secondary structure				T	T	T	S	S			G	G	G					T	T						T	T	T										.								T	T		T	T													S										T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions