Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 48 Aligned Residues 334 % Identity 11% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		A	L	V	S	C	A	L	I	S	G	C	K	E	E	N	K	T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	.	.	E	V
Query Conservation																																																																														.	.
Alig confidence																				.										.	.	.	.																																													.	.
Template Conservation																				.										.	.	.	.
Template Sequence		A	L	A	Q	V	A	V	F	P	A	L	S	G	K	T	D	A	Q	.	T	L	V	V	Y	S	S	L	D	.	.	.	.	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A
Template Known Secondary structure												T	T			T	T			.								S		.	.	.	.																T	T																							T	T			B		S
Template Predicted Secondary structure																				.										.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.														.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.														.	.
Template Sequence		F	S	S	A	M	D	L	Q	V	K	L	S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	.	.	.	.	.	.	.	.	.	.	.	.	R	N	T	A	Y	A	L	T	F	.	.	E	P	A	V	F	V	Y	H	K	P	S	F	T	.	.	T	E	K	P	P	A	T	R
Template Known Secondary structure				S											T	T	S							T	T	G	G	G	S		G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	T	T	T					B		.	.									G	G	G		S	.	.	S	S					S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.														.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.													.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H	G	R	I	A	T	Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	D	Q	E	Q	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S
Template Known Secondary structure											T					T	T							T	T	T																T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											T	T					S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I
Query Conservation
Alig confidence																																											.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A	S	R	H	P	D	V	G	I	V	L	P	K	D	Y	.	.	.	.	.	.	T	V	V	M	S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q
Template Known Secondary structure										T	T	S		S															T	T		T	T							S	S		.	.	.	.	.	.												T	T	B	S	S													S
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T
Query Conservation
Alig confidence									.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	M	A	R	Q	L	.	.	Q	I	P	A	V	S	P	E	V	A	G	E	N	T	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	Q	A	I	H	G	A	Q	L	R	P	V	P	V	S	P	G	L	M	V	Y	L	D	Q	V	K	R	S	R	L	I	E	R	W	N	E	A	L
Template Known Secondary structure								S	.	.				B			T	T			S	S	S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G						S	T	T	G	G	G	G	S
Template Predicted Secondary structure									.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.															.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions