Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 7 Aligned Residues 375 % Identity 16% Template c2zykA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin Resolution 2.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		K	P	D	K	L	V	V	W	E	N	A	D	D	G	V	Q	L	N	N	T	K	K	W	A	G	E	F	T	K	.	K	T	G	I	Q	V	E	V	V	P	V	A	L	L	K	Q	Q	E	K	L	T	L	D	G	P	A	G	K	G	A	D	L	V	T	W	P	H	D	R	L	G	E	A	V	T	K	G	L	L	Q
Template Known Secondary structure														S	S																.													T	T	T									G	G	G	T		S		S						G	G	G	T	T					T	T
Template Predicted Secondary structure																															.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y
Query Conservation
Alig confidence										.	.	.	.																		.	.																						.	.	.	.
Template Conservation										.	.	.	.																		.	.																						.	.	.	.
Template Sequence		P	I	Q	V	D	N	S	V	.	.	.	.	K	N	Q	F	D	D	V	A	M	K	A	L	T	Y	G	G	K	.	.	L	Y	G	L	P	K	A	I	E	S	V	A	L	I	Y	N	K	K	L	M	G	.	.	.	.	Q	V	P	A	T	Y	D	E	L	F	Q	Y	A	K	A	N	N	K	P	D	E	Q	K	Y
Template Known Secondary structure										.	.	.	.			T	B								T			T	T		.	.																	T	T	T		S	.	.	.	.	S			S	B													B	T	T	T	T	B
Template Predicted Secondary structure										.	.	.	.																		.	.																						.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																							.	.																																								.
Query SS confidence																							.	.																																								.
Query Sequence		G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	.	.	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A
Query Conservation																							.	.																																								.
Alig confidence																							.	.																																								.
Template Conservation
Template Sequence		G	V	L	F	E	A	N	N	F	Y	Y	T	Y	F	L	F	A	A	K	G	A	A	V	F	K	E	Q	D	G	T	L	D	P	N	E	I	G	L	N	S	P	E	A	V	Q	G	M	N	E	V	Q	K	W	F	T	E	A	R	L	P	Q	S	L	K	A	D	T	V	N	G	L	F	K	S	G	K	V	A	A	V
Template Known Secondary structure							T	T										T	T	T	T			S				S	S	S	S								T	T	S																T	S				T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N
Query Conservation
Alig confidence																		.																																																								.	.
Template Conservation																		.																																																								.	.
Template Sequence		I	N	G	P	W	A	I	K	D	Y	Q	A	A	G	I	N	.	V	G	V	A	P	L	P	K	I	D	G	K	D	A	Q	T	F	I	G	V	K	G	W	Y	L	S	A	Y	S	K	Y	P	K	Y	A	T	E	L	M	Q	F	L	T	S	K	E	A	L	A	S	R	F	K	E	T	.	.	G	E	I	P	P	Q
Template Known Secondary structure					G	G	G							T	T			.								B	S	S	S	S															T	T		S														S												.	.						B
Template Predicted Secondary structure																		.																																																								.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S	T	T	L	Q	A	S	Q	K	K	L
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	L	L	N	D	P	M	I	K	N	N	P	V	V	N	G	F	A	K	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	G	V	P	M	P	S	I	P	E	M	G	V	V	W	E	P	I	N	N	A	H	T	F	V	A	Q	G	K	Q	T	P	E	Q	A	L	N	D	A	V	K	I	M
Template Known Secondary structure												S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							S	G	G	G																T	T	S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.															.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		424	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	L	I	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	K	I	Q	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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