Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 19 Aligned Residues 384 % Identity 14% Template c2z8fB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose Resolution 1.65 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		E	E	N	K	T	N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	.	.	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D
Query Conservation																																																.	.
Alig confidence																																																.	.
Template Conservation
Template Sequence		T	D	D	G	G	V	V	N	I	T	Y	M	H	R	L	P	D	S	E	G	M	T	L	V	N	D	I	V	A	K	W	N	K	Q	H	P	D	I	Q	V	K	A	T	K	F	D	G	K	A	S	D	M	I	K	K	L	E	T	D	V	K	S	G	E	A	P	D	L	A	Q	V	G	Y	A	E	L	P	E	V	F
Template Known Secondary structure						S														T	T	S															T	T									S	S		G	G	G												T				S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		K	E	Q	L	I	D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	.	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N
Query Conservation																																																																.
Alig confidence																	.	.	.															.	.																													.
Template Conservation																	.	.	.															.	.
Template Sequence		T	K	G	L	L	Q	D	V	T	Q	Y	A	E	Q	Y	.	.	.	K	N	D	F	A	S	G	P	Y	S	L	V	Q	V	.	.	G	G	K	A	Y	G	L	P	Q	D	T	G	P	L	V	Y	F	Y	N	K	A	E	F	E	K	L	G	I	T	E	I	P	Q	T	A	D	E	F	I	A	A	A	K	T	A	A
Template Known Secondary structure			T	T		B											.	.	.	G	G	G	B							T	T			.	.	T	T											B													T	T			S				B
Template Predicted Secondary structure																	.	.	.															.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		D	P	A	N	K	K	Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	.	D	I	M	E	V	K	D	A	F	M	N
Query Conservation																																																																					.	.
Alig confidence																	.	.	.																																																		.	.
Template Conservation																	.	.	.
Template Sequence		A	A	G	K	Y	I	M	S	Y	Q	P	D	E	A	G	.	.	.	N	M	I	S	G	L	A	G	A	S	G	G	W	Y	K	V	K	G	D	S	W	V	V	N	T	E	T	D	G	S	K	A	T	A	D	F	Y	Q	Q	L	L	D	A	K	A	A	T	T	N	P	R	W	D	P	S	F	D	A	S	I	K	D
Template Known Secondary structure			T	T		B	S		B			G	G	G	T	T	.	.	.	T								T	T			S					T	T																								T	T		S	B				T	T	S									T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		G	T	A	P	M	A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	.	.	.	.	.	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.
Template Conservation
Template Sequence		G	S	L	I	G	T	V	A	A	A	W	E	A	P	L	F	M	T	S	S	G	G	T	G	S	G	E	W	Q	V	A	Q	L	G	D	W	F	G	N	A	G	K	T	G	P	D	G	G	S	A	V	A	V	L	K	N	S	K	H	P	K	E	A	M	E	F	L	D	W	F	N	T	Q	V	P	D	L	V	S	Q
Template Known Secondary structure		T		B							G	G	G								T	T	T	T	T	T	T	T								B		S	S		T	T		B		B									B	T	T		S														T								T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	S	P	G	A	A	L	P	V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L
Query Conservation
Alig confidence		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	G	L	V	P	A	A	T	T	E	D	A	E	T	.	.	.	.	.	.	.	.	.	.	.	P	S	E	W	S	T	F	F	G	G	Q	D	I	M	K	E	F	K	T	A	N	N	N	M	G	D	F	T	Y	M	P	G	F	S	A	V	A	A	K	M	N	E	T	A	A	K	A	T	G	K	V
Template Known Secondary structure		.	.	.	.	.	T				S	B		S	S					.	.	.	.	.	.	.	.	.	.	.								T	T	T													T	B							T	T															T				T
Template Predicted Secondary structure		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							348	.	350	.	.	.	.	.	.	.	.	.	360												.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	T	L	Q	A	S	Q	K	K	L	D	E	L	I	E	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	I	F	S	D	A	Q	T	T	S	V	D	T	L	K	N	F
Template Known Secondary structure		T																	T
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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