Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 26 Aligned Residues 380 % Identity 16% Template c2w7yA_ PDB info PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. Resolution 2.35 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.
Predicted Secondary structure																.	.	.	.																																																								.
Query SS confidence																.	.	.	.																																																								.
Query Sequence		S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	.	.	.	.	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	.	M	D	K	E	Q	L
Query Conservation																.	.	.	.																																																								.
Alig confidence																.	.	.	.																										.																														.
Template Conservation																																													.
Template Sequence		V	L	E	F	Y	H	G	Y	H	H	S	E	D	E	W	P	V	A	K	T	X	R	D	L	Y	D	K	F	A	E	E	H	S	G	V	E	F	K	P	T	P	V	N	.	G	D	L	K	D	I	X	N	N	K	V	A	S	G	E	F	P	D	V	I	D	L	A	G	N	A	V	S	L	A	A	I	E	Q	K	L
Template Known Secondary structure								S					T	T	T																					S								S	.	S											T	T	T				S					T	T										T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K
Query Conservation
Alig confidence													.	.																			.	.
Template Conservation													.	.																			.	.
Template Sequence		V	L	D	L	K	P	Y	I	D	S	N	.	.	K	L	E	K	N	V	G	L	N	Y	K	Q	N	Q	K	D	G	K	.	.	I	Y	T	V	H	E	Q	L	F	T	X	G	L	W	Y	N	K	D	I	F	A	K	A	G	A	K	T	P	D	Q	W	N	T	W	D	D	F	T	Q	A	X	A	S	I	R	K	Q
Template Known Secondary structure		B										T	.	.	T						T	T					T			T	T		.	.				B		S	B																	T				G	G	G			S													T	S
Template Predicted Secondary structure													.	.																			.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																				.																													.	.
Query SS confidence																																				.																													.	.
Query Sequence		K	Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	.	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	.	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P
Query Conservation																																				.																													.	.
Alig confidence																																				.																													.	.
Template Conservation
Template Sequence		D	G	V	Y	A	F	G	A	G	E	P	S	I	R	L	F	N	T	V	L	G	T	T	E	N	G	R	K	L	L	D	K	P	L	T	K	E	G	I	E	S	K	E	F	A	D	A	L	K	X	V	X	K	E	I	Q	A	N	G	S	K	N	A	G	G	D	A	N	A	Y	S	K	D	F	Q	E	G	K	S	A
Template Known Secondary structure		S	S							B	T	T										T	T	S							T	T	S				T	T	T	T	T	S																	T		G	G	G		S	B											T	T	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P
Query Conservation
Alig confidence																			.	.	.	.																																																						.	.
Template Conservation																			.	.	.	.																																																						.	.
Template Sequence		V	F	F	N	G	V	W	A	S	G	E	X	S	K	N	P	S	.	.	.	.	L	A	P	G	I	Y	P	A	G	V	A	I	S	S	S	G	G	G	I	T	I	S	S	K	X	S	E	A	K	Q	K	L	A	L	E	F	L	K	Y	X	T	S	D	D	V	Q	K	V	I	F	E	K	V	.	.	G	A	N	P
Template Known Secondary structure							G	G	G					T	T	S	T	T	.	.	.	.						B	G	G	G													B	S	S	S																T	S										T	S	.	.		S		B
Template Predicted Secondary structure																			.	.	.	.																																																						.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S	T	T	L	Q	A	S	Q	K
Query Conservation
Alig confidence																		.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.
Template Sequence		S	N	E	N	V	N	V	K	E	L	S	E	K	S	S	E	.	.	.	.	.	.	A	T	T	K	I	L	G	Q	A	I	T	Q	V	K	N	A	K	A	V	V	P	T	V	S	D	V	W	G	G	D	V	H	T	A	I	I	N	A	L	T	E	S	A	A	E	N	V	D	V	D	Q	K	V	K	S	T	Q	D
Template Known Secondary structure		S		T	T	S								T				.	.	.	.	.	.															T		S																									T	T	S	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.							.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		422	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	D	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	K	S	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions