Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 50 Aligned Residues 278 % Identity 16% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K	A
Query Conservation
Alig confidence														.	.	.	.	.												.														.	.
Template Conservation														.	.	.	.	.												.														.	.
Template Sequence		V	L	Y	L	Y	N	W	T	Y	Y	T	P	.	.	.	.	.	T	S	L	I	K	K	F	E	Q	Q	Y	.	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	.	.	D	M	F	A	K	L	S	I	G	A	S	G	Y	D	L	V	V	P	S	G	D	F	V	S	I	M	K	R	K	H	L	L	E	K	I	D
Template Known Secondary structure									T	T	T	S		.	.	.	.	.												.	T									S				.	.							S	S	S			S		S					B										T	T
Template Predicted Secondary structure														.	.	.	.	.												.														.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.						20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I	A
Query Conservation
Alig confidence								.	.	.																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	K	I	P	N	.	.	.	V	Q	F	I	K	E	S	V	R	A	R	I	A	Y	D	P	K	M	.	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	P	S	Y	A	R	T	W	S	I	F	S	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	A
Template Known Secondary structure		G	G	G		G	G	.	.	.	G	G	G	B									T	T	S	T	T		.	S	S															T	T	T			S			S	S	G	G	G	G	G		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T
Template Predicted Secondary structure								.	.	.																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S	T	Y	I
Query Conservation
Alig confidence																											.	.	.	.	.	.																							.
Template Conservation																											.	.	.	.	.	.																							.
Template Sequence		Y	R	M	S	M	M	D	D	M	R	E	V	M	G	A	A	L	A	S	L	G	Y	N	V	N	.	.	.	.	.	.	T	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	.	V	K	F	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V	V	A	H	G	F	A	E	A
Template Known Secondary structure		T	S					S													T	T			T	T	.	.	.	.	.	.																		T	G	G	G		.					S	S	S								T	S		S
Template Predicted Secondary structure																											.	.	.	.	.	.																							.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V	V	T
Query Conservation
Alig confidence																								.	.	.	.																																									.	.
Template Conservation																								.	.	.	.																																									.	.
Template Sequence		F	F	A	E	T	P	E	A	M	H	E	H	I	D	F	F	I	P	Q	D	V	A	.	.	.	.	S	P	V	Y	V	D	S	F	C	I	P	K	G	A	R	N	R	D	L	A	H	A	F	I	N	F	F	L	E	P	A	H	Y	A	E	F	L	D	T	F	.	.	G	F	P	S	T	I	H	R	E	A	A
Template Known Secondary structure						S		G	G	G	G	G	G							T	T	T	T	.	.	.	.									B			T	T		S													T	S												.	.	T				S	S	B	T	T	G	G
Template Predicted Secondary structure																								.	.	.	.																																									.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions