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Job DescriptionP76042
Confidence100.00%DateThu Jan 5 12:17:42 GMT 2012
Rank5Aligned Residues387
% Identity16%Templatec2uvgA_
PDB info PDB header:sugar-binding proteinChain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100........
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Query Sequence  VSIEFMHSSVEQERQAVISKLIARFEKENPGITVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRK
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Template Sequence  VNLRMSWWG. GNGRHEVTLKALEEFHKEHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKDGTGFYN
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   28.30...... ...40.........50.........60.........70.........80.........90.........100......
 
   109110.........120.........130.........140.........150.........160.........170.........180........
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Query Sequence  AVATVISNVGEGAFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLNDPANKKYGI
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Template Sequence  LFSVKEQ. LDLAQFDPKELQQTTVNGK. . LNGIPISVTARIFYFNDATWAKAGLEYPKTWDELLAAGQVFKEKLGDQYYP
Template Known Secondary structure  GGGGTTT.S
GGGS
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   107..110... ......120.........130.. .......140.........150.........160.........170.........180...
 
   189190.........200.........210.........220.........230.........240..... ....250.........260.
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Query Sequence  ALPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLTANTMPGS. . . . . . . NDIMEVKDAFMNGTAP
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Template Sequence  VVLEHQDTLALIRSYMTQKYNIPTIDEANKKFAYSPEQWVEFFTMYKTMVDNHVMPSTKYYASFGKSNMYEMKPWNGEWA
Template Known Secondary structure 
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   184.....190.........200.........210.........220.........230.........240.........250.........260...
 
   262.......270.........280......... 290.........300.........310.........320.........330.......
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Query Sequence  MAIYSTYILPAVIKEGDPKNVGFVVPTE. . . . KNSAVYGMLTSLTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPG
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Template Sequence  GTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQESAMLINFLLNSKEGVELGLER. .
Template Known Secondary structure  GGGTS
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   265....270.........280.........290.........300.........310.........320.........330.........340..
 
   338.340.........350.........360.........370.........380.........390.........400.........410.......
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Query Sequence  AALPVNKAVVTTATWKDNDVIKALGELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQ
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Template Sequence  GVPLSATAVTQLRASGVIKDEDPSVAGLNMALE. . . . . . . . LPHKMTTSPYFDDPQIVSLFGDAIQYIDYGQKTVQETAE
Template Known Secondary structure  SSB
STT
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GGGG
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   344.....350.........360.........370...... ...380.........390.........400.........410.....
 
   418.420.........
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Query Sequence  ASQKKLDELIEQ
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Template Sequence  YFNKQGDRILKR
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   416...420.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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