Job Description P76042 Confidence 99.97% Date Thu Jan 5 12:17:42 GMT 2012 Rank 59 Aligned Residues 271 % Identity 16% Template c2qryD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein Resolution 2.25 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	.	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K
Query Conservation																																									.
Alig confidence																														.											.
Template Conservation																														.
Template Sequence		V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	X	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K	S
Template Known Secondary structure													S	T	T	S	S											S	S	.		S								S													G	G	G				S							G	G	G						T	T	T		B
Template Predicted Secondary structure																														.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.												.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.												.	.	.	.	.	.
Template Sequence		G	V	A	A	D	A	V	N	V	P	G	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	.	.	.	.	N	P	P	Q	S	L	K	E	L	V	E	.	.	.	.	.	.	S	D	Q	N	W	R	V	I	Y
Template Known Secondary structure					T	T	S				T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S															T	T	T		S	.	.	.	.	S			S	S							.	.	.	.	.	.		S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.												.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.															.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S	T	Y
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	X	Q	K	V	Y	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T
Template Known Secondary structure				T	T	T																G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G										T	T						S	S										T	T	S		S						T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V	V	T
Query Conservation
Alig confidence																								.	.	.	.	.																																									.	.
Template Conservation																								.	.	.	.	.																																									.	.
Template Sequence		S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	.	.	.	.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	X	V	S	P	A	F	Q	N	A	I	P	T	G	N	.	.	W	X	Y	P	V	A	N	V	T	L	P
Template Known Secondary structure																					T	T		.	.	.	.	.											B	T	T		S													T	S					T	T					T	.	.		S			S	S
Template Predicted Secondary structure																								.	.	.	.	.																																									.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290
		349	350
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		291	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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