Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 40 Aligned Residues 368 % Identity 18% Template c2i58B_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose Resolution 2.80 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		N	V	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	.	.	Y	A	K	V	M	D	K	E	Q	L	I
Query Conservation																																																																					.	.
Alig confidence											.	.																															.	.																									.	.
Template Conservation											.	.																															.	.
Template Sequence		T	V	T	I	E	Y	F	N	Q	.	.	K	K	E	M	T	K	T	L	E	E	I	T	R	D	F	E	K	E	N	P	K	I	K	V	K	V	V	N	V	P	.	.	N	A	G	E	V	L	K	T	R	V	L	A	G	D	V	P	D	V	V	N	I	Y	P	Q	S	I	E	L	Q	E	W	A	K	A	G	V	F
Template Known Secondary structure											.	.		G	G	G													T	T		T	T									S	.	.	S											T	T				S						T	T	S									T	T		B
Template Predicted Secondary structure											.	.																															.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	K	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K
Query Conservation
Alig confidence						.	.	.	.	.																							.	.
Template Conservation						.	.	.	.	.																							.	.
Template Sequence		E	D	L	S	.	.	.	.	.	N	K	D	Y	L	K	R	V	K	N	G	Y	A	E	K	Y	A	V	N	E	K	V	.	.	Y	N	V	P	F	T	A	N	A	Y	G	I	Y	Y	N	K	D	K	F	E	E	L	G	L	K	V	P	E	T	W	D	E	F	E	Q	L	V	K	D	I	V	A	K	G	Q	T	P
Template Known Secondary structure					T	.	.	.	.	.	T		S	G	G	G	G	B	G	G	G					T		B	T	T	B		.	.						B	B																T						B													T	T	T
Template Predicted Secondary structure						.	.	.	.	.																							.	.
Template SS confidence
		81	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.																																				.	.	.	.
Query SS confidence																												.	.	.	.	.	.																																				.	.	.	.
Query Sequence		Y	G	I	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	.	.	.	.	.	.	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	.	.	.	D	I	M	E	V	K	D	A	F
Query Conservation																												.	.	.	.	.	.																																				.	.	.	.
Alig confidence																												.	.	.	.	.	.																																				.	.	.	.
Template Conservation
Template Sequence		F	G	I	A	G	A	D	A	W	T	L	N	G	Y	N	Q	L	A	F	A	T	A	T	G	G	G	K	E	A	N	Q	Y	L	R	Y	S	Q	P	N	A	I	K	L	S	D	P	I	M	K	D	D	I	K	V	M	D	I	L	R	I	N	G	S	K	Q	K	N	W	E	G	A	G	Y	T	D	V	I	G	A	F
Template Known Secondary structure		B				T	T		G	G	G	G													T	S	S								T	S	S		T	T				T	T												T	T	S	S	S	T	T		B		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		M	N	G	T	A	P	M	A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	.	.	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M
Query Conservation																																					.	.
Alig confidence																																					.	.
Template Conservation
Template Sequence		A	R	G	D	V	L	M	T	P	N	G	S	W	A	I	T	A	I	N	E	Q	K	P	N	F	K	I	G	T	F	M	I	P	G	K	E	K	G	Q	S	L	T	V	G	A	G	D	L	A	W	S	I	S	A	T	T	K	H	P	K	E	A	N	A	F	V	E	Y	M	T	R	P	E	V	M	Q	K	Y	Y	D
Template Known Secondary structure				T	S	S	S						G	G	G							T			S	S							B		B	S	S	T	T			B					B	S	S					B	S	S		S													T	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	P	G	A	A	L	P	V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S
Query Conservation
Alig confidence				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		V	D	.	.	G	S	P	T	A	I	E	G	V	K	Q	A	G	E	D	S	P	L	A	G	M	T	E	Y	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	R	H	L	V	W	L	Q	Q	Y	W	T	S	E	A	D	F	H	T	L	T	M	N	Y	V	L	T	G	.	.	D	K	Q
Template Known Secondary structure				.	.				B		B	T	T						T	T	S	T	T	T	T	T	T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T					G	G	G	S	S	S																	.	.
Template Predicted Secondary structure				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
		314	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.																	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	L	Q	A	S	Q	K	K	L	D	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	V	N	D	L	N	A	F	F	N	P	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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