Job Description P76042 Confidence 62.50% Date Thu Jan 5 12:17:42 GMT 2012 Rank 97 Aligned Residues 135 % Identity 14% Template c2hpgB_ PDB info PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																	.																																	.	.
Query SS confidence																	.																																	.	.
Query Sequence		K	T	N	V	S	I	E	F	M	H	S	S	V	E	Q	.	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	.	.	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E
Query Conservation																	.																																	.	.
Alig confidence																	.																		.															.	.														.
Template Conservation																																			.																														.
Template Sequence		G	A	K	Y	T	L	R	F	G	H	V	L	A	P	G	E	P	Y	H	Q	A	F	L	K	W	A	K	A	V	E	E	K	T	.	N	G	D	V	R	I	E	V	F	P	S	S	Q	L	G	V	E	E	D	I	I	E	Q	I	R	X	G	A	P	.	V	G	W	N	T	D	S	A	R	L	G	X	Y	V	K	D
Template Known Secondary structure				S											T	T	S	T																T	.	T	T	S											T	T	T										T	T		S	.											T	T	T	S	G	G
Template Predicted Secondary structure																																			.																														.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.														110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	I	D	R	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.
Template Sequence		I	G	V	X	N	L	A	Y	F	I	D	F	X	G	A	K	T	P	E	E	A	I	E	V	L	K	K	I	K	Q	S	P	T	X	Q	K	W	L	K	E	L	E	Q	R	F	G	I	K	V	L	S	F	Y	W	V	Q	G	Y	R	H	F	V	T	N	K	.	.	.	.	.	.	.	.	.	P	I	R	K	P	E
Template Known Secondary structure		G	G	G	G	G	S	T	T					T	T			S														S																																	S	S	.	.	.	.	.	.	.	.	.				S	G	G
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.										.	.	.	.	.	.
		170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		170	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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