Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 33 Aligned Residues 370 % Identity 16% Template c2gh9A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose Resolution 1.95 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	.	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K
Query Conservation																																																															.
Alig confidence										.																				.																																	.
Template Conservation										.																				.
Template Sequence		K	I	T	V	W	T	H	F	.	G	G	P	E	L	E	W	L	K	E	Q	A	R	T	F	E	R	T	S	.	G	T	K	V	E	V	V	E	V	P	F	A	E	I	K	Q	K	F	I	L	G	A	P	Q	G	Q	A	A	D	L	V	V	T	V	P	H	D	W	V	G	E	M	A	Q	A	G	V	L	E	P	V
Template Known Secondary structure										.																		T	T	.	S																					G	G	G	T		S		S							G	G	G							T	T		B
Template Predicted Secondary structure										.																				.
Template SS confidence
		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I
Query Conservation
Alig confidence										.	.															.	.																									.	.	.	.
Template Conservation										.	.															.	.																									.	.	.	.
Template Sequence		G	K	Y	V	T	Q	A	Y	.	.	L	A	D	L	Q	G	V	A	V	E	A	F	T	F	.	.	G	G	R	L	M	G	L	P	A	F	A	E	S	V	A	L	I	Y	N	K	K	Y	V	K	.	.	.	.	E	P	P	R	T	W	E	E	F	L	A	L	A	Q	K	L	T	T	G	A	T	F	G	F	L	Y
Template Known Secondary structure		G	G	G	S					.	.				B								T			.	.	T	T				S														T	T	T		S	.	.	.	.	S			S	S													S	S	S
Template Predicted Secondary structure										.	.															.	.																									.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																	.	.																																												.	.
Query SS confidence																	.	.																																												.	.
Query Sequence		A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	.	.	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	.	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I
Query Conservation																	.	.																																												.	.
Alig confidence																	.	.																																												.	.
Template Conservation
Template Sequence		N	I	G	D	P	Y	F	N	F	G	F	F	K	A	F	G	A	E	N	V	F	A	K	D	A	K	G	N	L	D	P	T	K	L	L	I	G	G	E	V	G	E	K	A	L	Q	F	I	K	D	L	R	F	K	Y	N	L	V	P	E	G	V	D	Y	G	V	A	D	G	A	F	K	D	G	A	L	A	M	I	L
Template Known Secondary structure			T	T													T		S	S	S					T	T	T								S	S	S																	T	S			S		T	T													T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	.	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N
Query Conservation																						.
Alig confidence																						.																																																				.	.
Template Conservation																																																																										.	.
Template Sequence		N	G	P	W	A	L	G	D	Y	K	K	A	K	V	D	F	G	I	A	P	F	P	V	P	P	G	A	K	N	P	W	G	P	F	L	G	V	Q	G	V	V	V	N	A	Y	S	K	N	K	T	Q	A	V	N	F	A	K	T	L	V	T	G	R	N	L	V	A	F	N	Q	A	G	.	.	G	R	I	P	V	S
Template Known Secondary structure				G	G	G							T	T												T	T		S	S														B	T	T		T	T												T	S											S	.	.						B
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	.	V	G	K	A	D	L	S	T	T	L	Q	A	S	Q	K	K
Query Conservation																																																																	.
Alig confidence							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	A	V	K	.	.	Q	L	E	K	D	P	V	V	A	G	F	S	K	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	G	A	P	M	P	N	I	P	E	M	G	K	V	W	G	P	W	G	N	A	I	S	L	A	I	Q	R	P	D	S	N	V	K	K	I	V	E	D	M	V	A	E
Template Known Secondary structure							.	.		T	T	T	S								T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G							S	T	T																			T	T
Template Predicted Secondary structure							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.															330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		423	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	K	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions